1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tagcatgtcataaatcctatactgttagtgctatgattttttaggttatcatgcattcgtagctatatttcgtttctaagttttggtattcactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAGTCATACGCTAAAAGTTTATCTTCCGGAATGTAATTTG
species | Glycine max |
transcript | GLYMA20G38790.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|208206870|gb|GE004663.1|GE004663
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|298168800|gb|HO009730.1|HO009730
genomic: GATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|207821309|gb|GD790094.1|GD790094
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTEST: gi|193338472|gb|FK303399.1|FK303399
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCT
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|151405233|gb|EV275047.1|EV275047
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|298191648|gb|HO039127.1|HO039127
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|13563206|gb|BG551426.1|BG551426
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|208192634|gb|GD989754.1|GD989754
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|298198893|gb|HO042256.1|HO042256
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|193340928|gb|FK307205.1|FK307205
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|151408547|gb|EV278355.1|EV278355
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|192319101|gb|FK010637.1|FK010637
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTCCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|254329094|gb|GR833466.1|GR833466
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|192325538|gb|FK018434.1|FK018434
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|22522110|gb|BU080921.1|BU080921
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAEST: gi|298199357|gb|HO042720.1|HO042720
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCGGCTCAEST: gi|298184578|gb|HO029791.1|HO029791
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
ttatcatgcattcgtagctatatttcgtttctaagttttggtattcactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAGTCATACGCTAAAAGTTTATCTTCCGGAATGTAATTTG
tatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagcatgtcataaatcctatactgttagtgctatgattttttaggttatcatgcattcgtagctatatttcgtttctaagttttggtattcactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCAGTCATACGCTAAAAGTTTATCTTCCGGAATGTAATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- gcatgtc
- - - - - - - - - - - - ttagtgc
- - - - - - - - - - - - - - - - - - - - - - - - tcatgca