1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggtataccatttcttgtgtaaaacatagttaatcttattagaacttgatgtaaatgtgtactgacttctaattaatcgtgcggtgaatatgcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCTGATCCTTTACCCAACTCCGAATCACGGAATCCCCGAAGGCATTCTTCCT
species | Glycine max |
transcript | GLYMA20G38790.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCTEST: gi|151405233|gb|EV275047.1|EV275047
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCTEST: gi|298191648|gb|HO039127.1|HO039127
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATEST: gi|208224417|gb|GE021812.1|GE021812
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGAT
EST: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG AATT-ATCCCAAGCAAGAGCA-GCGGTAGGAGAEST: gi|13563206|gb|BG551426.1|BG551426
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGA
EST: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCTEST: gi|151408547|gb|EV278355.1|EV278355
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCTEST: gi|192319101|gb|FK010637.1|FK010637
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: GTGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCTEST: gi|192319102|gb|FK010638.1|FK010638
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: GTGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCTEST: gi|192325538|gb|FK018434.1|FK018434
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG AATTTATCCCAAGCAAGAGCAAGCGGTAAGAGATTTACCACCTCAGAAGCTEST: gi|22522110|gb|BU080921.1|BU080921
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCTEST: gi|298199357|gb|HO042720.1|HO042720
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCTEST: gi|298184578|gb|HO029791.1|HO029791
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG AATTTATCCCAAGCAAGAGCAAGCGGT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGT
tgatgtaaatgtgtactgacttctaattaatcgtgcggtgaatatgcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCTGATCCTTTACCCAACTCCGAATCACGGAATCCCCGAAGGCATTCTTCCT
tgcttct CT-rich tract
ttctaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtataccatttcttgtgtaaaacatagttaatcttattagaacttgatgtaaatgtgtactgacttctaattaatcgtgcggtgaatatgcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCTGATCCTTTACCCAACTCCGAATCACGGAATCCCCGAAGGCATTCTTCCT
- - - ccatttc
- - - - - - - - -gtaaaac
- - - - - - - - - - - - - - - - - - - - - -cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcggtg