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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTTGGGGAGAACTGCTAGTAGAAGAGATGATCTTGAATCTCTTGCATACACACTAGTATTCCTTCATAAGGGCCGATTACCATGGCAAGGTTATCAGgtacatggattaaattacatttctatggagtaatttactgtgcaaatttcattcctttacatattttatctcaatcttattttaccttgtctgttag

Basic information

species Glycine max
transcript GLYMA20G38770.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G017835_T02 (Zea mays), 5'ss of exon 8
------------------------------TCATTTGGGGAGAACTGCTAGTAGAAGAGATGATCTTGAATCTCTTGCATACACACTAGTATTCCTTCATAAGGGCCGATTACCATGGCAAGGTTATCAGgtacatggattaaattacatttctatggagtaatttac-tgtgcaaatttcattcctttacatattttatctcaatcttattttaccttgtctgttag----------
                               ||||| || ||||| ||||| || ||||||||| | || || ||||| || |||||||||||||||||   |||| | || |||||||| || |||||||||  |  | |  || |  |||  ||    |  | | | | || |    |  ||   ||   || | |   |  | | |   ||   ||||  |              
AGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAGCAGGAGAGATGATTTGGAGTCACTTGCCTATAcactagtattccttcaccggggcaggttgccatggcagggatatcaggtatctt-actgtataatcttttaatcttattctctccatttggagccatttttttcttgagtagtcttgtttgaccattgatttttttgtgggacctgtgtttacag

upper sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G017835_T03 (Zea mays), 5'ss of exon 9
TCATTTGGGGAGAACTGCTAGTAGAAGAGATGATCTTGAATCTCTTGCATACACACTAGTATTCCTTCATAAGGGCCGATTACCATGGCAAGGTTATCAGgtacatggattaaattacatttctatggagtaatttac-tgtgcaaatttcattcctttacatattttatctcaatcttattttaccttgtctgttag----------
 ||||| || ||||| ||||| || ||||||||| | || || ||||| || |||||||||||||||||   |||| | || |||||||| || |||||||||  |  | |  || |  |||  ||    |  | | | | || |    |  ||   ||   || | |   |  | | |   ||   ||||  |              
ACATTTAGGAAGAACCGCTAGCAGGAGAGATGATTTGGAGTCACTTGCCTATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatctt-actgtataatcttttaatcttattctctccatttggagccatttttttcttgagtagtcttgtttgaccattgatttttttgtgggacctgtgtttacag

upper sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 9
TCATTTGGGGAGAACTGCTAGTAGAAGAGATGATCTTGAATCTCTTGCATACACACTAGTATTCCTTCATAAGGGCCGATTACCATGGCAAGGTTATCAGgtacatggattaaattacatttctatggagtaatttactgt-gcaaatttcattcctttacatattttatctcaatcttattttaccttgtctgttag
|||||| |||||||||||||| ||||| |||||||| |||||  | ||||| |||||  | || |||||    ||  |||| ||||||||||| ||||||||||         || |  ||  | || || |   |  ||| |||   ||| || || | |  ||  | ||||   || | ||| |            
TCATTTAGGGAGAACTGCTAGCAGAAGGGATGATCTGGAATCATTAGCATATACACTGATCTTTCTTCACCGAGGTAGATTGCCATGGCAAGGATATCAGgtactgcagacctatcattttgttttgtagaatcatgttgttgcatgattc-tttctctgctaatcctgtctcttactcaattttcag----------

upper sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 9
TCATTTGGGGAGAACTGCTAGTAGAAGAGATGATCTTGAATCTCTTGCATACACACTAGTATTCCTTCATAAGGGCCGATTACCATGGCAAGGTTATCAGgtacatggattaaattacatttctatggagtaatttactgtgcaaatttcattcctttacatattttatctcaatcttattttaccttgtctgttag
||| ||||| |||||||| || |||||||| ||||| || ||||||||||| |||||  | |||||||||   ||| | ||||| |||||||| ||||||||| |||    |||    ||||   ||   |  | |   ||    |  |  |    |||  | | |     ||  ||||||||       |||||||
TCACTTGGGAAGAACTGCCAGCAGAAGAGACGATCTAGAGTCTCTTGCATATACACTCATCTTCCTTCATCGTGGCAGGTTACCCTGGCAAGGCTATCAGgtatatgttcaaaagcctatttaactgcgcttgtctctagtagttaagtattcaacttatgtgtgtgcatcca--cttatttt------cctgttag