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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCAATCTGCTCTTATATTAAGTATTCCGAGGCGCAAACTCAGTGATGAAACTCAGGAAACTCTACGTACATCGCAATTTCCCGGCACACATGTTAAGgtaaggggagatgaatgactaattgatttcgttggttgaatatcatggctgattttctttatttttggttcttgtgttcag

Basic information

species Glycine max
transcript GLYMA20G38770.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 15
GGATCAATCTGCTCTTATATTAAGTATTCCGAGGCGCAAACTCAGTGATGAAACTCAGGAAACTCTACGTACATCGCAATTTCCCGGCACACATGTTAAGgtaagggg-agatgaatg--------actaattgatttcgttggttgaatatcatggctgattttctttatttttggttcttgtgttcag-----------
|||||||||||| || || || ||| | || | ||||||||   ||||||||||||||||||||||  | ||||| || |||||  | ||||||||||||||||  |  | ||| ||         || ||     ||| ||   ||| |   |||   |   ||    |      |      |||               
GGATCAATCTGCACTCATCTTGAGTGTGCCCAAGCGCAAACCTGGTGATGAAACTCAGGAAACTCTTAGGACATCCCAGTTTCCAAGTACACATGTTAAGgtaaacgataaatggatacacacgctacaaaacatattcattc-ctgacttgtatgtacgtcattacaaaagagaagagtccatgtctgctatagaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163927003|gb|EH039353.1|EH039353
EST:     AAACTCAGGAAACTCTACGTACATCGCAATTTCCCGGCACACATGTTAAG                         GAAAAATGGTCAAAAAACCTTTACCTTGCCTGTTTGTGCTACGGACGCACA
genomic: AAACTCAGGAAACTCTACGTACATCGCAATTTCCCGGCACACATGTTAAGgtaaggggag ... ttgtgttcagGAAAAATGGTCAAAAAACCTTTACCTTGCCTGTTTGTGCTACGGACGCACA
EST: gi|254339336|gb|GR848053.1|GR848053
EST:     AAACTCAGGAAACTCTACGTACATCGCAATTTCCCGGCACACATGTTAAG                         GAAAAATGGTCAAAAAACCTTTACCTTGCCTGTTTGTGCTACGGACGCACA
genomic: AAACTCAGGAAACTCTACGTACATCGCAATTTCCCGGCACACATGTTAAGgtaaggggag ... ttgtgttcagGAAAAATGGTCAAAAAACCTTTACCTTGCCTGTTTGTGCTACGGACGCACA
EST: gi|120534539|gb|EH262672.1|EH262672
EST:     AAACTCAGGAAACTCTACGTACATCGCAATTTCCCGGCACACATGTTAAG                         GAAAAATGGTCAAAAAACCTTTACCTTGCCTGTTTGTGCTACGGACGCACA
genomic: AAACTCAGGAAACTCTACGTACATCGCAATTTCCCGGCACACATGTTAAGgtaaggggag ... ttgtgttcagGAAAAATGGTCAAAAAACCTTTACCTTGCCTGTTTGTGCTACGGACGCACA