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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCTCTGAAATTTGAACATAGGAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAAgtaggcactttcttacgtttatgttattttactaattttttaaaataaatttatcttgatttgtgatcaagtatgtatagctaaagtttaacttttatgttatgtcaaaag

Basic information

species Glycine max
transcript GLYMA20G38770.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 3
GTGGCTCTGAAATTTGAACATAGGAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAAgtaggcactttcttacgtttatgttattttactaattttt-taaaataaatttatcttgatttgtgatcaagtatgt---atagctaaagtttaacttttatg--ttatgtcaaaag-------------------------
|| ||| ||||||| || || || ||||| || ||||| |||||||||||||| || |||||||| || |||||||| |       || | |||     |   ||  | | |||  ||  |  |||| | |  |    |||     | |||   ||  |  ||     || ||||    || | |  |||                          
GTAGCTTTGAAATTCGAGCACAGAAACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAAgtatgtctgaggtttcttttcaaacaggatatgattatttgcaatctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacag

upper sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 5'ss of exon 3
GTGGCTCTGAAATTTGAACATAGGAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAAgtaggc---------actttcttacgtttatgttattttactaattttttaaaat---------aaatttatcttgat--ttgtgatcaagtatgtatagctaaagtttaactt--ttatgttat----gtcaaaag---------------------------
|| ||| | || ||||||||| ||| ||| ||||| || || ||||| |||||||||||||||||||| |||||||  |          |||   |    | |||  | |  ||| |  |  ||  |||         || | || | | ||  | | | | |  | |||   | |   ||| ||  |  ||| || ||    || ||  |                           
GTAGCTTTAAAGTTTGAACATCGGAGCAGCAAGGGTTGCAATTATGGTCCTCCTTACGAGTGGCAAGTTTACAAgtgcgtctcgaaccgactcagtcctttctatcctttgctacaatgtcattggaattgctgttccaattctagcctcatcgtggaggttatttttgtgctg-tcgggttcaatctaattaggtcataaatgttaatggtgatgataatccttggttgttgcgcag

upper sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S208_44V6.1 (Physcomitrella patens), 5'ss of exon 3
----------GTGGCTCTGA--AATTTGAACATAGGAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAAgtaggcactttcttacgtttatgttatttt-actaattttttaaaataaatttatcttgatttgtgatcaagtat--gtatagctaaagtttaacttttatgttatgtcaaaag-------------------------------------------
          |  | ||  |  | || || ||| |||   |||| ||||||||  |||| |||||||||||||||||||| |||||||  |     |||   | |  |   ||| | | |    | || | ||    ||| || |  | |  || |  | |  | ||  || |  || | | || |  |    | |                                               
GTTGCGGGTTGAAGTTCGAACAAGTTCGAGCATCGGAGTGGTAACGGCTGTAATCATGGTCCTCCTTACGAGTGGCAAGTTTACAAgtgcg-----tctcgagctcgtaccattgtgatttcactcttgagatgtgatta-ctagtgtcgcaattacctttctgcatttcttattttcatcattcaaatgtgattagggcttgtctcctaaacctccatggttgacgcggattctttctccag