Sequence
atgc intronic sequence ATGC exonic sequenceTTGTGTGTCTTCTTGTTGCAATCTTTGGGCCCTTATTATGGATGCTGGAACTGGTTTTACAGCTCAAGTTTACAAGTTGTCAACCTTTTTCTTGCACAAGgtgaaatatgctgtatgtcttgcagtttctttaatctaattccatgtgattaaaattatccatgtgactgttgctttgcag
Basic information
species | Glycine max |
transcript | GLYMA20G38770.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G017835_T01 (Zea mays), 5'ss of exon 11
TTGTGTGTCTTCTTGTTGCAATCTTTGGGCCCTTATTATGGATGCTGGAACTGGTTTTACAGCTCAAGTTTACAAGTTGTCAACCTTTTTCTTGCACAAGgtgaaatatgct-gtatgtcttgcagtttctttaatctaattccatgtgattaaaattatccatg-tgactgttgctttgcag
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TTCAATATCATCATGCGCAAATCTTTGGGCAATCATTATGGATGCAGGAACTGGCTTCTCAGCTCAAGTTTATGAGCTATCTTCACACTTTCTTCATAAGgtaggaccttcccatctgcacctca---tgttcattctcttttgatgttctcaattttgcaaaaaacaaaaacaaaaacacag
upper sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 12
TTGTGTGTCTTCTTGTTGCAATCTTTGGGCCCTTATTATGGATGCTGGAACTGGTTTTACAGCTCAAGTTTACAAGTTGTCAACCTTTTTCTTGCACAAGgtgaaata-tgctgtat---gtcttgcagtttct--ttaatctaattccatgtgattaaaattatccatg--tgactgttgctttgcag---------
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TTGTGTTGCATCTTGCTCAAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattctggtgtccatagttttttattttttaattagttaattttaataataataataataataataatttaggatcatttttctgacataccag
upper sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 12
TTGTGTGTCTTCTTGTTGCAATCTTTGGGCCCTTATTATGGATGCTGGAACTGGTTTTACAGCTCAAGTTTACAAGTTGTCAACCTTTTTCTTGCACAAGgtgaa-atatgctgtat-------gtcttg--cagtttctttaatcta--attccatgtgattaaaattatccatgtga----ctgttgctttgcag------------------
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CAGTGTGGCTTCTTGTACAAATCTGTGGGCTCTTATTATGGATGCGGGGACAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAGgtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254339336|gb|GR848053.1|GR848053EST: CTGGTTTTACAGCTCAAGTTTACAAGTTGTCAACCTTTTTCTTGCACAAG GAATGGATTATGGAGCAGTGGGATAAAAACTTTTACATCACTTCTATTGCA
genomic: CTGGTTTTACAGCTCAAGTTTACAAGTTGTCAACCTTTTTCTTGCACAAGgtgaaatatg ... tgctttgcagGAATGGATTATGGAGCAGTGGGATAAAAACTTTTACATCACTTCTATTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGTGTGTCTTCTTGTTGCAATCTTTGGGCCCTTATTATGGATGCTGGAACTGGTTTTACAGCTCAAGTTTACAAGTTGTCAACCTTTTTCTTGCACAAGgtgaaatatgctgtatgtcttgcagtttctttaatctaattccatgtgattaaaattatccatgtgactgttgctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA