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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGAAACACTTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataactaaatcttgttttgttttcattctctctacattgtgatctatgtacttgcaattcctggtgttttaccagtgagaattgtttttttctttgttttactcttgtag

Basic information

species Glycine max
transcript GLYMA20G38720.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g04270.1 (Oryza sativa), 5'ss of exon 3
TTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGAAACACTTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataactaaatcttgttttgttttcattctctctacattgtgatctatgtacttgcaattcctggtgttttaccagtgagaattgtttttttctttgttttactcttgtag
|||||||||| ||||| ||||| |||||| | || || |||||||| ||| ||||||| || || |||||||| ||||  ||||||||||| || ||||||||    |  |   | || |  ||  | | ||   | | || | |  | ||||    |||||     |     | |    ||    ||||                         
TTGGTCAGGGTATTGCAAATGCAGTTGGGCTGGCCCTTGCTGAGAAGCACCTGGCTGCTCGTTTCAACAAGCCCGACAGCGAGATTGTTGATCACTACACgta----attttttttttatcatgaatacctttagttttcactttagt-tatggtggtgcaaccttggtaacatgattcatggattttgtgcag---------------------

upper sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G033208_T01 (Zea mays), 5'ss of exon 3
TTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGAAACACTTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataactaa--atcttgttttgttttcattctctctacattgtgatctatgtacttgcaattcctggtgttttaccagtgagaattgtttttttctttgttttactcttgtag
|||||||||| || |||||||| |||||||| ||||| |||||||| ||| ||||||| || || ||||||||||||| |||||| || ||||| ||||||||  |   ||||  |        ||       || || |  |||    ||| ||   ||    |   |||     |    || | |  | |  |      |||             
TTGGTCAGGGTATCGCCAATGCCGTTGGGTTGGCACTTGCTGAGAAGCACCTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttctaataacgccaacgtgcagcgtctcgcttt-tattacagtct-tgcttttagtctgtgtggcacagttttggtaacatgtttcgtggatcctgtacag---------

upper sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G45290.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGAAACACTTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataactaaatcttg--------ttttgttttcattctctctacattgtgatctatgtacttgcaattcctggtgttttaccagtgagaattgtttttttctttgttttactcttgtag
|||| || || ||||| ||||||||||| ||||| || || ||||| || ||||||||  |||||||||| ||||||||||||||||||||||| |||||||| |||    |   |||         |||| || | ||  |   |  |||||||| | ||||     | | | | |  ||                                          
TTGGACAAGGTATTGCAAATGCTGTTGGTTTAGCTCTTGCGGAGAAGCATTTGGCTGCTAGATTTAACAAACCTGACAATGAGATTGTTGACCACTACACgtaagattttgactccttcaacggcacttttattgttatctttcttggattgtgatgt-tgtaaactgactgctttggattag----------------------------------------

upper sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0022g01440.t01 (Vitis vinifera), 5'ss of exon 3
TTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGAAACACTTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataactaaatcttgttttgttttcattctctctacattgtgatctatgtacttgcaattcctggtgttttaccagtgagaattgtttttttctttgttttactcttgtag
|||||||||| ||||||||||||||||| || ||    |  ||||| || ||||||||| |||| ||||| ||||||||||||||||| ||||| ||||||||      || | ||||| |  ||| |  |||| | | |      ||||   |   | ||||   | | |  ||||  ||  |    |||||||  | |   ||| ||||    
TTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGAAGCATTTGGCTGCAAGATTCAACAAACCTGACAATGAGATTGTCGACCACTACACgtaaatc--ctcattcttggt--gttcttgttctgtttcct-----atctcaatgtatacaatcatttg-gccttacttgtttg----gttttttgatattgattattcttag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22539779|gb|BU089622.1|BU089622
EST:     TTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACAC                         ATATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATTTCAAATGAAGC
genomic: TTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataac ... actcttgtagATATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATTTCAAATGAAGC
EST: gi|8826649|gb|BE210379.1|BE210379
EST:     TTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACAC                         ATATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATTTCAAATGAAGC
genomic: TTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataac ... actcttgtagATATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATTTCAAATGAAGC
EST: gi|18848458|gb|BM567678.1|BM567678
EST:     TTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACAC                         ATATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATTTCAAATGAAGC
genomic: TTGGCTGCACGATTTAACAAGCCTGACAATGAGATTGTTGACCATTACACgtaggataac ... actcttgtagATATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATTTCAAATGAAGC