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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCACTTGGTTCAACCGTGACCGTTTCATTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagcttttacttctccttgtttcttttttgtacttttactattgggattcattttgatctgtgactcagaattctgatcctcatcccgttagaattta...

Basic information

species Glycine max
transcript GLYMA20G38720.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g04270.1 (Oryza sativa), 5'ss of exon 1
TCCCACTTGGTTCAACCGTGACCGTTTCATTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagc---ttttacttctccttgtttcttttttgta-cttttactattgggattcattttgatctgtgactcagaattctgatcctcatcccgttagaattta
 |||   ||||||||||| ||||| ||||| ||||| || || || |||||||||||||| || || || || ||||| || ||||| |||   ||  |||| |||   |   |  || | ||| | |||   | |  ||||  ||  | |  ||  ||  | | || | |  | || || |       | | ||   | ||| 
CCCCTACTGGTTCAACCGCGACCGCTTCATCCTCTCCGCCGGCCACGGCTGCATGCTCCAGTACGCCCTGCTCCACCTCGCCGGCTACGACGCCGTCTTGgtaagcgcttcccatatccctttgctccttgcatctctctttcgcttctcgagttggtt--ggtttggggcggataaatcgggagtaggttc-gtgcaagttt-

upper sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G60750.2 (Arabidopsis thaliana), 5'ss of exon 1
TCCCACTTGGTTCAACCGTGACCGTTTCATTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagcttttacttctcc--ttgtttcttttttgtacttttactattg------ggattcattttgatctgtgactcaga---attctgatcctcatcccgttagaattta-------------------------------------------
 ||   |||||||||||||||||| ||| |||| |||||||||||||| || ||| | |  || ||  | ||||| ||||| ||||| ||||| || | |||| |   |  ||||||   ||  ||  |||   |    |    ||||      | | | | |||  |   |   |   |    || ||||  |||||   |      ||                                            
CCCTTATTGGTTCAACCGTGACCGATTCGTTCTATCTGCTGGACATGGATGTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatctcttctctgtttaattgctttcgatctgatcgtaattgatgaatgtagtaactttagtggatagattgaatctgttttgatattcatctgatggctgcttgaagtagattcactgaaaaggtgtttggatttgtttattaggag

upper sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G45290.1 (Arabidopsis thaliana), 5'ss of exon 1
TCCCACTTGGTTCAACCGTGACCGTTTCATTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagcttttactt---ctccttgtttcttttttgtacttttactat-tgggattcattttgatctgtgact---caga--attctgatcctcatcccgttaga--attta-----------------------------------------------------------------------
|||    ||||| |||||||| |||||| ||||||||||||||||||| |||||| | ||||| ||||| ||||||||||| ||||| ||||| |||  |||  |  ||  |||   || ||| ||   ||| | | |||||| | |     ||| |  ||     || | |   ||||   ||| | | | |  | | || |   ||||                                                                        
TCCTTACTGGTTTAACCGTGATCGTTTCGTTCTCTCTGCTGGACATGGATGCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGGgtttgtgttctcttactctgcttattaagtttgtatccttttagtttacattattgagattacatagtaaatacacagattgttccgtttccctgctcatttggtgatttttggagtcttgagatttagaattgtagaaccaacttaagatttgctgaagcagtgttgaagttttttattag

upper sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G60750.1 (Arabidopsis thaliana), 5'ss of exon 1
TCCCACTTGGTTCAACCGTGACCGTTTCATTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagcttttacttctcc--ttgtttcttttttgtacttttactattg------ggattcattttgatctgtgactcaga---attctgatcctcatcccgttagaattta----------------------------------------
 ||   |||||||||||||||||| ||| |||| |||||||||||||| || ||| | |  || ||  | ||||| ||||| ||||| ||||| || | |||| |   |  ||||||   ||  ||  |||   |    |    ||||      | | | | |||  |   |   |   |    || ||||  |||||   |      ||                                         
CCCTTATTGGTTCAACCGTGACCGATTCGTTCTATCTGCTGGACATGGATGTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatctcttctctgtttaattgctttcgatctgatcgtaattgatgaatgtagtaactttagtggatagattgaatctgttttgatattcatctgatggctgcttgaagtagattcactgaaaaggtgtttggatttgtttattag

upper sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv16s0022g01440.t01 (Vitis vinifera), 5'ss of exon 1
TCCCACTTGGTTCAACCGTGACCGTTTCATTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagcttttacttctccttgtttcttttttgtacttttactattgggattcattttgatctgtgactcagaattctgatcctcatcccgttagaattta---
 |||   |||||||| ||||| || ||| ||||||| ||||| || ||||| ||| | || |||||| | ||||| ||||| |||||||||||||||  ||| |  ||||  ||  |  ||  | ||||||  |  | || | ||     || ||||  | | |   |  |   | ||  | |   |    |  |    |   
CCCCTACTGGTTCAATCGTGATCGATTCGTTCTCTCCGCTGGCCACGGCTGTATGTTGCAGTATGCTTTACTTCATCTTGCTGGCTATGACAGTGTTAAGgtgaattttttatttccagtgcattttttttaaatgtatatttttaa---tctttttattttttatttttggtatatgggctttgccagagtttagcaaaaca

upper sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ07676 (Selaginella moellendorffii), 5'ss of exon 1
TCCCACTTGGTTCAACCGTGACCGTTTCATTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagcttttacttctccttgtttcttttttgtacttttactattgggattcattttgatctgtgactcagaattctgatcctcatcccgttagaattta
 ||    ||||||||| | || || ||| ||||||| ||||| || || |||||||||||||| || || || || ||||| ||||| ||||||||   |||  ||| |   ||   || |||||      |  ||||| ||||     ||| |  |    |   ||   || ||||        ||| |          
CCCTTACTGGTTCAACAGGGATCGCTTCGTTCTCTCGGCTGGTCACGGATGCATGCTCCAATACGCCCTTCTCCATCTTGCTGGCTACGACAGTGTCAAGgtaggctctccattgatctagtttc------gagctttt-ctatcaaagttcttcct----ttcaacatggatttcttgcttgtttccag----------

upper sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ07729 (Selaginella moellendorffii), 5'ss of exon 1
TCCCACTTGGTTCAACCGTGACCGTTTCATTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagcttttacttctccttgtttcttttttgtacttttactattgggattcattttgatctgtgactcagaattctgatcctcatcccgttagaattta
 ||    ||||||||| | || || ||| ||||||| ||||| || || |||||||||||||| || || || || ||||| ||||| ||||||||   |||  ||| |   ||   || |||||      |  ||||| ||||     ||| |  |    |   ||   || ||||  |     ||| |          
CCCTTACTGGTTCAACAGGGATCGCTTCGTTCTCTCGGCTGGTCACGGATGCATGCTCCAATACGCCCTTCTCCATCTTGCTGGCTACGACAGTGTCAAGgtaggctctccattgatctagtttc------gagctttt-ctatcaaagttcttcct----ttcaacatggatttcttgtttgtttccag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213617212|gb|DB971303.1|DB971303
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTG                         GAAGAAGACCTGAAGGAATTCCGACAATGGGGGAGCAGGACTCCTGGACAT
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagctttt ... tacatgatagGAAGAAGACCTGAAGGAATTCCGACAATGGGGGAGCAGGACTCCTGGACAT
EST: gi|15287320|gb|BI471211.1|BI471211
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTG                         GAAGAAGACCTGAAGGAATTCCGACAATGGGGGAGCAGGACTCCTGGACAT
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagctttt ... tacatgatagGAAGAAGACCTGAAGGAATTCCGACAATGGGGGAGCAGGACTCCTGGACAT
EST: gi|8826649|gb|BE210379.1|BE210379
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTG                         GAAGAAGACCTGAAGGAATTCCGACAATGGGGGAGCAGGACTCCTGGACAT
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagctttt ... tacatgatagGAAGAAGACCTGAAGGAATTCCGACAATGGGGGAGCAGGACTCCTGGACAT
EST: gi|7326487|gb|AW620296.1|AW620296
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGGTCTG                         GGAGAAAACCTGAAAGAATT
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagctttt ... tacatgatagGAAGAAGACCTGAAGGAATT
EST: gi|209723701|gb|BW662583.1|BW662583
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTG                         GAAGAAGACCTGAAGGAATTCCGACAATGGGGGA
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagctttt ... tacatgatagGAAGAAGACCTGAAGGAATTCCGACAATGGGGGA
EST: gi|18848458|gb|BM567678.1|BM567678
EST:     GCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTG                         GAAGAAGACCTGAAGGAATTCCGACAATGGGGGAGCAGGACTCCTGGACAT
genomic: GCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagctttt ... tacatgatagGAAGAAGACCTGAAGGAATTCCGACAATGGGGGAGCAGGACTCCTGGACAT