1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAGAAGACCTGAAGGAATTCCGACAATGGGGGAGCAGGACTCCTGGACATCCTGAGAACTTTGAGACAGTTGGAATTGAAGTGACTACAGgttagatatttcattagtttatgttattgttatcatagtgagcctttttgctgtgtcctgttgcttatcctcgtgttttgtttag
species | Glycine max |
transcript | GLYMA20G38720.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCTGGACATCCTGAGAACTTTGAGACAGTTGGAATTGAAGTGACTACAG GTCCTCTTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGEST: gi|22539779|gb|BU089622.1|BU089622
genomic: TCCTGGACATCCTGAGAACTTTGAGACAGTTGGAATTGAAGTGACTACAGgttagatatt ... ttttgtttagGTCCTCTTGGTCAGGGCATTGCCAATGCTGTTGGGTTAG
EST: CTGAGAACTTTGAGACAGTTGGAATTGAAGTGACTACAG GTCCTCTTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGAEST: gi|15287320|gb|BI471211.1|BI471211
genomic: CTGAGAACTTTGAGACAGTTGGAATTGAAGTGACTACAGgttagatatt ... ttttgtttagGTCCTCTTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGA
EST: TCCTGGACATCCTGAGAACTTTGAGACAGTTGGAATTGAAGTGACTACAG GTCCTCTTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGAEST: gi|8826649|gb|BE210379.1|BE210379
genomic: TCCTGGACATCCTGAGAACTTTGAGACAGTTGGAATTGAAGTGACTACAGgttagatatt ... ttttgtttagGTCCTCTTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGA
EST: TCCTGGACATCCTGAGAACTTTGAGACAGTTGGAATTGAAGTGACTACAG GTCCTCTTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGAEST: gi|18848458|gb|BM567678.1|BM567678
genomic: TCCTGGACATCCTGAGAACTTTGAGACAGTTGGAATTGAAGTGACTACAGgttagatatt ... ttttgtttagGTCCTCTTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGA
EST: TCCTGGACATCCTGAGAACTTTGAGACAGTTGGAATTGAAGTGACTACAG GTCCTCTTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGA
genomic: TCCTGGACATCCTGAGAACTTTGAGACAGTTGGAATTGAAGTGACTACAGgttagatatt ... ttttgtttagGTCCTCTTGGTCAGGGCATTGCCAATGCTGTTGGGTTAGCACTAGCTGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAAGACCTGAAGGAATTCCGACAATGGGGGAGCAGGACTCCTGGACATCCTGAGAACTTTGAGACAGTTGGAATTGAAGTGACTACAGgttagatatttcattagtttatgttattgttatcatagtgagcctttttgctgtgtcctgttgcttatcctcgtgttttgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG