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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGGGTTGAAGCAGATGTTATCAAAACCTGGATTAATTTTCTGGAAGATACTTGGGTTCTTCAGCGGTCAAATGCAGAAATGAACGACAAGCAGGTCAAgtatgtaattgaacttacaaaacttaaataatgataaatgttttgatgcttgttgttctttgttggtttgttattttgctggttatgttcttgtgtttta...

Basic information

species Glycine max
transcript GLYMA20G38530.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38530.1 (Glycine max), 5'ss of exon 13
lower sequence: AT5G13560.1 (Arabidopsis thaliana), 5'ss of exon 13
GTAGGGTTGAAGCAGATGTTATCAAAACCTGGATTAATTTTCTGGAAGATACTTGGGTTCTTCAGCGGTCAAATGCAGAAATGAACGACAAGCAGGTCAAgtatgtaattgaacttacaaaacttaaataatgataaatgttttgatgcttgttgttctttgttggtttgttattttgctggttatgttcttgtgtttta
||| |   |||||||| |||||||| || |||||||||||||| || ||||| ||| |||||||| | ||| ||   |||| ||| || ||||||     |||| |   |  |||  ||    ||   |    ||| || ||    ||||  | |  |        |     | |    |||  || |  | |       
GTAAGAAAGAAGCAGAAGTTATCAAGACGTGGATTAATTTTCTTGAGGATACATGGCTTCTTCAGTGCTCACATATCGAAACGAAGGATAAGCAGACTTTgtatttctatctactctcagctgtttc-tcgcaatacatcttgctttgctgctcgaccacaacaaat-----aatccattggc-atttcttag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6951428|gb|AW423496.1|AW423496
EST:     ACTTGGGTTCTTCAGCGGTCAAATGCAGAAATGAACGACAAGCAGGTCAA                         TGATGATTTGGAGAGACATGAGGACTACTTTGTGAACTTGGCCATTCAACT
genomic: ACTTGGGTTCTTCAGCGGTCAAATGCAGAAATGAACGACAAGCAGGTCAAgtatgtaatt ... atttttaaagTGATGATTTGGAGAGACATGAGGACTACTTTGTGAACTTGGCCATTCAACT
EST: gi|207762194|gb|GD731109.1|GD731109
EST:     ACTTGGGTTCTTCAGCGGTCAAATGCAGAAATGAACGACAAGCAGGTCAA                         TGATGATTTGGAGAGACATGAGGACTACTTTGTGAAC
genomic: ACTTGGGTTCTTCAGCGGTCAAATGCAGAAATGAACGACAAGCAGGTCAAgtatgtaatt ... atttttaaagTGATGATTTGGAGAGACATGAGGACTACTTTGTGAAC
EST: gi|151410338|gb|EV280153.1|EV280153
EST:     ACTTGGGTTCTTCAGCGGTCAAATGCAGAAATGAACGACAAGCAGGTCAA                         TGATGATTTGGAGAGACATGAGGACTACTTTGTGAACTTGGCCATTCAACT
genomic: ACTTGGGTTCTTCAGCGGTCAAATGCAGAAATGAACGACAAGCAGGTCAAgtatgtaatt ... atttttaaagTGATGATTTGGAGAGACATGAGGACTACTTTGTGAACTTGGCCATTCAACT