1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtttgaggttctatttttcatggctgcgtattgttaaagcaatgttcctgaatagtgttactctcagcatcctgttgtctaaaattttgatttgaccttgattgacagGAAGATGAACTTTCAAAATCAGTTAGCTCATGTAGGGTTGAAGCAGATGTTATCAAAACCTGGATTAATTTTCTGGAAGATACTTGGGTTCTTCAGCGGT
species | Glycine max |
transcript | GLYMA20G38530.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACCAGTTTGAAGAAGCAAACAATCAGATAGTTGAACACCTGAAGATAAAG GAAGATGAACTTTCAAAATCAGTTAGCTCATGTAGGGTTGAAGCAGATGTTEST: gi|207762194|gb|GD731109.1|GD731109
genomic: ACCAGTTTGAAGAAGCAAACAATCAGATAGTTGAACACCTGAAGATAAAGgtttgaggtt ... tgattgacagGAAGATGAACTTTCAAAATCAGTTAGCTCATGTAGGGTTGAAGCAGATGTT
EST: ACCAGTTTGAAGAAGCAAACAATCAGATAGTTGAACACCTGAAGATAAAG GAAGATGAACTTTCAAAATCAGTTAGCTCATGTAGGGTTGAAGCAGATGTTEST: gi|151410338|gb|EV280153.1|EV280153
genomic: ACCAGTTTGAAGAAGCAAACAATCAGATAGTTGAACACCTGAAGATAAAGgtttgaggtt ... tgattgacagGAAGATGAACTTTCAAAATCAGTTAGCTCATGTAGGGTTGAAGCAGATGTT
EST: ACCAGTTTGAAGAAGCAAACAATCAGATAGTTGAACACCTGAAGATAAAG GAAGATGAACTTTCAAAATCAGTTAGCTCATGTAGGGTTGAAGCAGATGTC
genomic: ACCAGTTTGAAGAAGCAAACAATCAGATAGTTGAACACCTGAAGATAAAGgtttgaggtt ... tgattgacagGAAGATGAACTTTCAAAATCAGTTAGCTCATGTAGGGTTGAAGCAGATGTT
agtgttactctcagcatcctgttgtctaaaattttgatttgaccttgattgacagGAAGATGAACTTTCAAAATCAGTTAGCTCATGTAGGGTTGAAGCAGATGTTATCAAAACCTGGATTAATTTTCTGGAAGATACTTGGGTTCTTCAGCGGT
tctaaaattttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaggttctatttttcatggctgcgtattgttaaagcaatgttcctgaatagtgttactctcagcatcctgttgtctaaaattttgatttgaccttgattgacagGAAGATGAACTTTCAAAATCAGTTAGCTCATGTAGGGTTGAAGCAGATGTTATCAAAACCTGGATTAATTTTCTGGAAGATACTTGGGTTCTTCAGCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA