1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...cataggagcaaagaccatgctgaaccaatctgtctgagtactaagtcttccatctgttgtaggggcacaattaattgatttttctttcttttatttttagGAACTGGTTGCTGAGATATCTGAACTGCAATGCAAAAAAGAAGATCTTGAACCTGAATTGAAAAAG
species | Glycine max |
transcript | GLYMA20G38530.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CATTAAAGGTTCGAGTGACTAAAGATGGTGAGGCTAGTAAAAAGGAGAAG GAACTGGTTGCTGAGATATCTGAACTGCAATGEST: gi|193384581|gb|FK350139.1|FK350139
genomic: CATTAAAGGTTCGAGTGACTAAAGATGGTGAGGCTAGTAAAAAGGAGAAGgtaatgtgtt ... ttatttttagGAACTGGTTGCTGAGATATCTGAACTGCAATG
EST: TTTAAAGGTTTCGAGTGACTAAAGATGGTGAGGCTAGTAAAAAGGAGAAG GAACTGGTTGCTGAGATATCTGAACTGCAATGC
genomic: -TTAAAGG-TTCGAGTGACTAAAGATGGTGAGGCTAGTAAAAAGGAGAAGgtaatgtgtt ... ttatttttagGAACTGGTTGCTGAGATATCTGAACTGCAATGC
tcttccatctgttgtaggggcacaattaattgatttttctttcttttatttttagGAACTGGTTGCTGAGATATCTGAACTGCAATGCAAAAAAGAAGATCTTGAACCTGAATTGAAAAAG
ttgatttttctttctt CT-rich tract
acaattaattgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cataggagcaaagaccatgctgaaccaatctgtctgagtactaagtcttccatctgttgtaggggcacaattaattgatttttctttcttttatttttagGAACTGGTTGCTGAGATATCTGAACTGCAATGCAAAAAAGAAGATCTTGAACCTGAATTGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - ccatgct
- - - - - - - - - - - - - - -ctgtctg
- - - - - - - - - - - - - - - - - - - - - - - - -ccatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagggg