Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttttagtttaccttagtctttcccagttttttttttatcttgataaacagcctcaagattctatgtatacttatagtgtctcaattttgatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAGAAGGCTCAAGGTATTGATATATCAGTGTATGGGTCTTCCAAAGTGGTGC

Basic information

species Glycine max
transcript GLYMA20G36740.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36740.3 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 3'ss of exon 6
------------------------ctttttagtt--taccttagtctttcccagttttt-----tttttatcttgataaacagcctcaagattc---tatgta-tacttatagtgtctcaattttgatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAGAAGGCTCAAGGTATTGATATATCAGTGTATGGGTCTTCCAAAGTGGTGC
                        ||| | |  |  |||   | || | |   |  | |     || | | | | |  | ||    |||||||    ||   | ||| ||   |     |||   ||||    |||| || |||||| |||| ||||||||||| ||||||||||| |||||||||||| | || ||  | || ||  | |  || || || ||||| |||||| 
gtatctatccctgttctgctaaatcttctcacatactacaccaatcatgcaatgcctgtaaaaattctcaccgtca-gatcaatgacaagattagaatagacaatacctaatatcgacaaatgacgatga-acagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAGAAGACCCAGGGCGTCGACATCGCGGGTTACGGCTCATCCAAGGTGGTGT

upper sequence: GLYMA20G36740.3 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 6
ctttttagtttaccttagtctttcccagttttttttttatcttgataaacagcctcaagattctatgtatacttatag-tgt---ctcaattttgatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAGAAGGCTCAAGGTATTGATATATCAGTGTATGGGTCTTCCAAAGTGGTGC
          |  |    |||| |    | |    |  |||   ||       ||  ||||  |  |   ||  | || |||   |  |||     |  || ||||||| ||| || |||| ||||||||||| || ||||||||||||||||||||| | || ||  | || ||  | | ||| ||||| ||||| |||||| 
------gtactgtcactatcttgctagatatagcctccatcgccatg------ctggagatgttgggaggacaaacagatgtaaacaaaataccctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAGAAGACGCAGGGGGTCGACATCGCGGCGTACGGGTCGTCCAAGGTGGTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317428|gb|GR826373.1|GR826373
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|6482608|gb|AW201853.1|AW201853
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|31467396|gb|CD409424.1|CD409424
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAAGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|192309346|gb|FK000554.1|FK000554
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|17964388|gb|BM271124.1|BM271124
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|27445968|gb|CA953091.1|CA953091
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|31464858|gb|CD406871.1|CD406871
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAAGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|58016749|gb|CX703491.1|CX703491
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|33389464|gb|CA852671.1|CA852671
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAAGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|58020306|gb|CX707048.1|CX707048
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|192309347|gb|FK000555.1|FK000555
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTTTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|13789611|gb|BG652202.1|BG652202
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|192302108|gb|FG995228.1|FG995228
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|254317427|gb|GR826372.1|GR826372
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAG-TTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAG-AGCAGATCGAGAAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAG
EST: gi|209703623|gb|BW656579.1|BW656579
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|209716887|gb|BW665486.1|BW665486
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|9260013|gb|BE348160.1|BE348160
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|9983774|gb|BE657882.1|BE657882
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|6913727|gb|AW395257.1|AW395257
EST:     ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTTATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaacagcctcaagattctatgtatacttatagtgtctcaattttgatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAGAAGGCTCAAGGTATTGATATATCAGTGTATGGGTCTTCCAAAGTGGTGC
                                         ttttgat  putative branch site (score: 4)
                  tatgtatacttata  TA-rich tract