1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCAACAGAGGAATTATGCAAGCACTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgctttacactgaattgaaaacttttatagttttgtctttaccaaatgggtaaattggtagacattttatgttttggtaaccttttggatttaataagtttgtgttttgttgttttgtcatacag
species | Glycine max |
transcript | GLYMA20G36740.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAG GTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTTATCACTTCCTEST: gi|58020306|gb|CX707048.1|CX707048
genomic: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgcttta ... tgtcatacagGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTTATCACTTCCT
EST: GGTTCCCCAACATATACGGT-CTTTTGGGACATGGAAAG GTGGAAGGGAGAAGGCTCCTGCTGCTTTTNGTCGTAAAGTTATCACTTCCTEST: gi|13789918|gb|BG652509.1|BG652509
genomic: GGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgcttta ... tgtcatacagGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTTATCACTTCCT
EST: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAG GTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTTATCACTTCCTEST: gi|254317427|gb|GR826372.1|GR826372
genomic: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgcttta ... tgtcatacagGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTTATCACTTCCT
EST: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAG GTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTTATCACTTCCTEST: gi|14008581|gb|BG725185.1|BG725185
genomic: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgcttta ... tgtcatacagGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTTATCACTTCCT
EST: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAG GTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTTATCACTTCCTEST: gi|208297285|gb|GE089294.1|GE089294
genomic: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgcttta ... tgtcatacagGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTTATCACTTCCT
EST: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAG GTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTTATCACTTCCT
genomic: CCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgcttta ... tgtcatacagGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGTAAAGTTATCACTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAACAGAGGAATTATGCAAGCACTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGGTTCCACAACATATACGGTCCTTTTGGGACATGGAAAGgcatgctttacactgaattgaaaacttttatagttttgtctttaccaaatgggtaaattggtagacattttatgttttggtaaccttttggatttaataagtttgtgttttgttgttttgtcatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA