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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTATATATACCATTCCCATCACTCCCCATGCCCTCTCAATTCACTTCCTATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcctcaattcccaacccttttattcactctcactgcaccacttctttatataacacattttttttttaaatttttatcatccatgtttagggtt...

Basic information

species Glycine max
transcript GLYMA20G36740.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298193694|gb|HO040342.1|HO040342
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|19270441|gb|BM886697.1|BM886697
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|208306383|gb|GE106660.1|GE106660
EST:     CTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: CTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|19347576|gb|BM892456.1|BM892456
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|209716886|gb|BW665485.1|BW665485
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|209703622|gb|BW656578.1|BW656578
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|192302093|gb|FG995227.1|FG995227
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|11687709|gb|BF595385.1|BF595385
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|24135344|gb|BU925854.1|BU925854
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT