1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cacagtgaaaattgttttgtttatggagtatttgctaatgttttggacttaattttcttaaccattttctgttcattcgccaaattaatgtggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCTTGAGAGAGAGCCTTACTGGCCATCAGAGAAGCTTAAGATTTCCATCACT
species | Glycine max |
transcript | GLYMA20G36740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCTEST: gi|19270441|gb|BM886697.1|BM886697
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCTEST: gi|208306383|gb|GE106660.1|GE106660
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: CTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCTEST: gi|19347576|gb|BM892456.1|BM892456
genomic: CTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCTEST: gi|209716886|gb|BW665485.1|BW665485
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCTEST: gi|209703622|gb|BW656578.1|BW656578
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCTEST: gi|192302093|gb|FG995227.1|FG995227
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCTEST: gi|11687709|gb|BF595385.1|BF595385
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCTEST: gi|24135344|gb|BU925854.1|BU925854
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
gacttaattttcttaaccattttctgttcattcgccaaattaatgtggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCTTGAGAGAGAGCCTTACTGGCCATCAGAGAAGCTTAAGATTTCCATCACT
aattttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacagtgaaaattgttttgtttatggagtatttgctaatgttttggacttaattttcttaaccattttctgttcattcgccaaattaatgtggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCTTGAGAGAGAGCCTTACTGGCCATCAGAGAAGCTTAAGATTTCCATCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC