1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgacttttcttctctttcacttaggattttccattattattattattattattattattattattatttgtatttgttgttcttgttgtttgcggagcttagagactgacctgttatgtagTGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGGAGGTGGAGGCACAGGTGGAAGGTTCGGAATTTGGATCCTTATCTGGCAA
species | Glycine max |
transcript | GLYMA20G36110.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCTGATTCTTCAACTACTG TGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAGAGGAGATTCAGGEST: gi|213602718|gb|DB956626.1|DB956626
genomic: ACCTGATTCTTCAACTACTGgtatgacttt ... tgttatgtagTGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGG
EST: TGACCTGTGGGCTCAAATTAACCGGCAGGGACCTGATTCTTCAACTACTG TGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGG
genomic: TGACCTGTGGGCTCAAATTAACCGGCAGGGACCTGATTCTTCAACTACTGgtatgacttt ... tgttatgtagTGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGG
tttgtatttgttgttcttgttgtttgcggagcttagagactgacctgttatgtagTGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGGAGGTGGAGGCACAGGTGGAAGGTTCGGAATTTGGATCCTTATCTGGCAA
gactgac putative branch site (score: 2)
atttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgacttttcttctctttcacttaggattttccattattattattattattattattattattattatttgtatttgttgttcttgttgtttgcggagcttagagactgacctgttatgtagTGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGGAGGTGGAGGCACAGGTGGAAGGTTCGGAATTTGGATCCTTATCTGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG