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gttatttgaaactgtctctctctctgttttttttttttgaatgaacaaagtggagtggagctagggctaggtattgtacattttgatttttgttgtttgttccccaattaattaagtgaattccgaggctgcactgtttcagACTTTGGGCACATTTGTTTTATGGTGAAATTGAAACCTCTATTGTCATATTTACATGGAAATTGGTGTGGATAGAGCATTTCTTGAATGGATACCTCTCC
species | Glycine max |
transcript | GLYMA20G36110.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTACGCCTTCTCTGAGTTGTGCCGTGA---G- ACTTTGGGCACATTTGTTTTATGGTGAAATTGAAACCTCTATTGTCATATTEST: gi|213602718|gb|DB956626.1|DB956626
genomic: CTTACGCCTTCTCTGAGTTGTGCCGTGAGTTGAgttatttgaa ... actgtttcagACTTTGGGCACATTTGTTTTATGGTGAAATTGAAACCTCTATTGTCATATT
EST: TCAACAACAGATTGGCCCTTACGCCTTCTCTGAGTTGTGCCGTGAGTTGA ACTTTGGGCACATTTGTTTTATGGTGAAATTGAAACCTCTATTGTCATATT
genomic: TCAACAACAGATTGGCCCTTACGCCTTCTCTGAGTTGTGCCGTGAGTTGAgttatttgaa ... actgtttcagACTTTGGGCACATTTGTTTTATGGTGAAATTGAAACCTCTATTGTCATATT
ttttgttgtttgttccccaattaattaagtgaattccgaggctgcactgtttcagACTTTGGGCACATTTGTTTTATGGTGAAATTGAAACCTCTATTGTCATATTTACATGGAAATTGGTGTGGATAGAGCATTTCTTGAATGGATACCTCTCC
aattaat putative branch site (score: 3)
ctgtttc putative PPT
aattaattaagtgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatttgaaactgtctctctctctgttttttttttttgaatgaacaaagtggagtggagctagggctaggtattgtacattttgatttttgttgtttgttccccaattaattaagtgaattccgaggctgcactgtttcagACTTTGGGCACATTTGTTTTATGGTGAAATTGAAACCTCTATTGTCATATTTACATGGAAATTGGTGTGGATAGAGCATTTCTTGAATGGATACCTCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA