1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tttaccttttcttttctcctttatttctcatttgtatcttcatttaccttttcctttgtatatcaactctagccattcttttcctcatttattttatcagGTTTGGTGGTAGACAGATACATGCCAGTGAAGATGATGGTTCGGTTAACCATGCCTTAGTCCGGGATCTGGAAGAAGATGTCATTCGGCTGGAGCAGTTT
species | Glycine max |
transcript | GLYMA20G36110.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AAGGATAGGAAGGATGCCCAAAAGTGCATAGAATTGATGAACGGACGATG GTTTGGTGGTAGACAGATACATGCCAGTGAAGATGATGGTTCGGTTAACCAEST: gi|9984040|gb|BE658148.1|BE658148
genomic: AAGGATAGGAAGGATGCCCAAAAGTGCATAGAATTGATGAACGGACGATGgtaattatat ... attttatcagGTTTGGTGGTAGACAGATACATGCCAGTGAAGATGATGGTTCGGTTAACCA
EST: AAGGATAGGAAGGATGCCCAAAAGTGCATAGAATTGATGAACGGACGATG GTTTGGTGGTAGACAGATACATGCCAGTGAAGATGATGGTTCGGTTAACCAEST: gi|22928101|gb|BU545240.1|BU545240
genomic: AAGGATAGGAAGGATGCCCAAAAGTGCATAGAATTGATGAACGGACGATGgtaattatat ... attttatcagGTTTGGTGGTAGACAGATACATGCCAGTGAAGATGATGGTTCGGTTAACCA
EST: AAGGATAGGAAGGATGCCCAAAAGTGCATAGAATTGATGAACGGACGATG GTTTGGTGGTAGACAGATACATGCCAGTGAAGATGATGGTTCGGTTAACCAEST: gi|19052889|gb|BM731556.1|BM731556
genomic: AAGGATAGGAAGGATGCCCAAAAGTGCATAGAATTGATGAACGGACGATGgtaattatat ... attttatcagGTTTGGTGGTAGACAGATACATGCCAGTGAAGATGATGGTTCGGTTAACCA
EST: AAGGATAGGAAGGATGCCCAAAAGTGCATAGAATTGATGAACGGACGATG GTTTGGTGGTAGACAGATACATGCCAGTGAAGATGATGGTTCGGTTAACCAEST: gi|213611162|gb|DB975008.1|DB975008
genomic: AAGGATAGGAAGGATGCCCAAAAGTGCATAGAATTGATGAACGGACGATGgtaattatat ... attttatcagGTTTGGTGGTAGACAGATACATGCCAGTGAAGATGATGGTTCGGTTAACCA
EST: GAAGGATGCCCAAAAGTGCATAGAATTGATGAACGGACGATG GTTTGGTGGTAGACAGATACATGACAGTGAAGATGATGGTTCGGTTAACCA
genomic: GAAGGATGCCCAAAAGTGCATAGAATTGATGAACGGACGATGgtaattatat ... attttatcagGTTTGGTGGTAGACAGATACATGCCAGTGAAGATGATGGTTCGGTTAACCA
accttttcctttgtatatcaactctagccattcttttcctcatttattttatcagGTTTGGTGGTAGACAGATACATGCCAGTGAAGATGATGGTTCGGTTAACCATGCCTTAGTCCGGGATCTGGAAGAAGATGTCATTCGGCTGGAGCAGTTT
ccattcttttcctcat CT-rich tract
tcatttattttatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaccttttcttttctcctttatttctcatttgtatcttcatttaccttttcctttgtatatcaactctagccattcttttcctcatttattttatcagGTTTGGTGGTAGACAGATACATGCCAGTGAAGATGATGGTTCGGTTAACCATGCCTTAGTCCGGGATCTGGAAGAAGATGTCATTCGGCTGGAGCAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG