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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCCTTCTTTTGCAGTGACAGAGAGTATATAATTGGGAGGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAGgttcgaatgaaattaattgctaattaaattccttctctgtttggataaacttttccatcaatacttattaagggaataaaataagaaggaaaaaaaaacg...

Basic information

species Glycine max
transcript GLYMA20G36050.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36050.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G133958_T03 (Zea mays), 5'ss of exon 4
TTTCCCTTCTTTTGCAGTGACAGAGAGTATATAATTGGGAGGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAGgttcgaatgaaattaattgctaattaaattccttctctgtttggataaacttttccatcaat-acttattaagggaataaaataagaaggaaaaaaaaacg------
|| |||||||| ||||||||||||||||| |||||||   | || || ||| |    ||  |    || || |||||||| |||||   |||| | | |    ||    ||| | || ||   | |        ||||  | || | |||||||  |||| | |    || ||| ||   ||         
TTCCCCTTCTTCTGCAGTGACAGAGAGTACATAATTGCTCGCCGGATATGGAAACTGGGGGGCGCCTATTATTGTGTCACAAAGgta-aaatggagtaatagacttgaaaaactactgcttcttgtca------ttttgtagcactgacttattcggggattgattccaggaggtaatggaacttatgttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258972|gb|BG881880.1|BG881880
EST:     GGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAG                         GGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
genomic: GGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAGgttcgaatga ... gcttcttcagGGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
EST: gi|192294836|gb|FG987525.1|FG987525
EST:     TTGGGAGGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAG                         GGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
genomic: TTGGGAGGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAGgttcgaatga ... gcttcttcagGGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
EST: gi|13787976|gb|BG650568.1|BG650568
EST:     TTGGGAGGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAG                         GGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
genomic: TTGGGAGGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAGgttcgaatga ... gcttcttcagGGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
EST: gi|26049090|gb|CA785543.1|CA785543
EST:     TTGGGAGGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAG                         GGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
genomic: TTGGGAGGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAGgttcgaatga ... gcttcttcagGGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
EST: gi|17021249|gb|BM092283.1|BM092283
EST:     CGAATTTACTACTGTGTCACTAAG                         GGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
genomic: CGAATTTACTACTGTGTCACTAAGgttcgaatga ... gcttcttcagGGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT