1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aattatgactgtgttctcattctttccggaacaatctttttacgttatacatatacttctggtttgtgatattgacttgtggcttgttttgcttcttcagGGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGATTTATTTTATTCAAGCTGGTGTATTCGTGCAG
species | Glycine max |
transcript | GLYMA20G36050.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAG GGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGATEST: gi|192294836|gb|FG987525.1|FG987525
genomic: GGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAGgttcgaatga ... gcttcttcagGGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
EST: TTGGGAGGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAG GGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGATEST: gi|13787976|gb|BG650568.1|BG650568
genomic: TTGGGAGGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAGgttcgaatga ... gcttcttcagGGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
EST: TTGGGAGGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAG GGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGATEST: gi|26049090|gb|CA785543.1|CA785543
genomic: TTGGGAGGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAGgttcgaatga ... gcttcttcagGGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
EST: TTGGGAGGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAG GGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGATEST: gi|17021249|gb|BM092283.1|BM092283
genomic: TTGGGAGGCGAATTTGGGACGCAGGACGAATTTACTACTGTGTCACTAAGgttcgaatga ... gcttcttcagGGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
EST: CGAATTTACTACTGTGTCACTAAG GGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
genomic: CGAATTTACTACTGTGTCACTAAGgttcgaatga ... gcttcttcagGGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGAT
tatacatatacttctggtttgtgatattgacttgtggcttgttttgcttcttcagGGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGATTTATTTTATTCAAGCTGGTGTATTCGTGCAG
tattgac putative branch site (score: 2)
cttgttttgcttcttc putative PPT
atatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattatgactgtgttctcattctttccggaacaatctttttacgttatacatatacttctggtttgtgatattgacttgtggcttgttttgcttcttcagGGAGTACCTTGCCCCTCCATGCCAAGGCATAATAAACCTAAACGAGTTGATTTATTTTATTCAAGCTGGTGTATTCGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG