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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGAGTTCAGGTTGAAGTGGGATGACATGCTTATACATGCTTCCACCATACAAGAGTGTGTCCTCACTGGAACAATGATGGTGCACTGGGTGCGCAAGgttagtggtgaaagttgttttgtgatatgtgagtttgttgcagtctcatgttgatcttgtgcaattctgcctgcag

Basic information

species Glycine max
transcript GLYMA20G36050.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36050.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g02820.t01 (Vitis vinifera), 5'ss of exon 3
TGATGAGTTCAGGTTGAAGTGGGATGACATGCTTATACATGCTTCCACCATACAAGAGTGTGTCCTCACTGGAACAATGATGGTGCACTGGGTGCGCAAGgttagtggtgaaagttgttttgtgatat-gtgagt---ttgttgcagtctcat--gttgatcttgtgcaattctgcctgcag-----
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TGATGGCTTTAGATTGAAGTGGGATGACATGCTTATATATGCTGCAACTTTGGAGGAGTGCCCCACCACAGGAACCATGTTAGTTCACTGGGTTCGCAAGgtagggagagtcttctgttgtatttttccattagtggactgtcttggttgcatcggctaatttt-tccaatcctttttgtggcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209719139|gb|BW674901.1|BW674901
EST:     TACAAGAGTGTGTCCTCACTGGAACAATGATGGTGCACTGGGTGCGCAAG                         TTTCCCTTCTTTTGCAGTGACAGAGAGTATATAATTGGGAGGCGAATT
genomic: TACAAGAGTGTGTCCTCACTGGAACAATGATGGTGCACTGGGTGCGCAAGgttagtggtg ... ctgcctgcagTTTCCCTTCTTTTGCAGTGACAGAGAGTATATAATTGGGAGGCGAATT
EST: gi|213615049|gb|DB960774.1|DB960774
EST:     TACAAGAGTGTGTCCTCACTGGAACAATGATGGTGCACTGGGTGCGCAAG                         TTTCCCTTCTTTTGCAGTGACAGAGAGTATATAA
genomic: TACAAGAGTGTGTCCTCACTGGAACAATGATGGTGCACTGGGTGCGCAAGgttagtggtg ... ctgcctgcagTTTCCCTTCTTTTGCAGTGACAGAGAGTATATAA
EST: gi|192294836|gb|FG987525.1|FG987525
EST:     TACAAGAGTGTGT-CTCACTGGAACAATGATGGTGCACTGGGTGCGCAAG                         TTTCCCTTCTTTTGCAGTGACAGAGAGTATATAATTGGGAGGCGAATTTGG
genomic: TACAAGAGTGTGTCCTCACTGGAACAATGATGGTGCACTGGGTGCGCAAGgttagtggtg ... ctgcctgcagTTTCCCTTCTTTTGCAGTGACAGAGAGTATATAATTGGGAGGCGAATTTGG
EST: gi|26049090|gb|CA785543.1|CA785543
EST:     TACAAGAGTGTGTCCTCACTGGAACAATGATGGTGCACTGGGTGCGCAAG                         TTTCCCTTCTTTTGCAGTGACAGAGAGTATATAATTGGGAGGCGAATTTGG
genomic: TACAAGAGTGTGTCCTCACTGGAACAATGATGGTGCACTGGGTGCGCAAGgttagtggtg ... ctgcctgcagTTTCCCTTCTTTTGCAGTGACAGAGAGTATATAATTGGGAGGCGAATTTGG
EST: gi|209700806|gb|BW683062.1|BW683062
EST:     TACAAGAGTGTGTCCTCACTGGAACAATGATGGTGCACTGGGTGCGCAAG                         TTTCCCTTCNTTTGCAGTGACAGAGAGTATATAATTGGGAGGCGAATTTGG
genomic: TACAAGAGTGTGTCCTCACTGGAACAATGATGGTGCACTGGGTGCGCAAGgttagtggtg ... ctgcctgcagTTTCCCTTCTTTTGCAGTGACAGAGAGTATATAATTGGGAGGCGAATTTGG