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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTGGTTGAGGAAAAAGACGGAGGGCGGGCATGGATTCAGATGATGGACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgccttacctttcattcttcccttttgcagtttgttagaattgagtgagtgagggtgtatgcttgttag

Basic information

species Glycine max
transcript GLYMA20G36050.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36050.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0025g02820.t01 (Vitis vinifera), 5'ss of exon 2
GAAGTTGGTTGAGGAAAAAGACGGAGGGCGGGCATGGATTCAGATGATGGACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgccttacctttcat----tcttcccttttgcagtttgttagaattgagtgagtgagggtgtatgctt--gttag-----------------------------------------------------------------------------------------------------
  |  | || ||||  ||||| ||||| |  |||||||||||||||||||| || ||||| || ||||||| |||| |||| ||| | || |||||||| ||| || ||   | || |    | ||| |||  ||| || ||   |   || | | |||    | |  |    |||||                                                                                                     
CCAACTTGTAGAGGTGAAAGATGGAGGTCCCGCATGGATTCAGATGATGGATCGCTCTACTCCAACCATGAGCTATAAAGCATGGAGGAGAGATCCTGATgtaggctttctttctcttagtattttctcttaggcatttggtggaataagaataaatgaattagcacccagaagttagcacatatgattcttccttctagggcttgctctattttatacaaatagttaaatttcatatcttgtgcgattgattgagttaaattctgttgggtttgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298168977|gb|HO020281.1|HO020281
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
EST: gi|209719139|gb|BW674901.1|BW674901
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
EST: gi|209705241|gb|BW673781.1|BW673781
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
EST: gi|9819788|gb|BE555301.1|BE555301
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
EST: gi|5058455|gb|AI736866.1|AI736866
EST:     CCCGT-CTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
genomic: CC-GTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
EST: gi|209707871|gb|BW662077.1|BW662077
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
EST: gi|209716308|gb|BW684779.1|BW684779
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
EST: gi|9900212|gb|BE609180.1|BE609180
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCA
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCA
EST: gi|209725639|gb|BW663128.1|BW663128
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGG
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGG
EST: gi|213615049|gb|DB960774.1|DB960774
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
EST: gi|209727052|gb|BW680332.1|BW680332
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGA
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGA
EST: gi|26049090|gb|CA785543.1|CA785543
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
EST: gi|209700806|gb|BW683062.1|BW683062
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
EST: gi|213615212|gb|DB965020.1|DB965020
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
EST: gi|6134791|gb|AW133184.1|AW133184
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCT
EST: gi|209701094|gb|BW664196.1|BW664196
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         AGTGGACCGCCGCAGTACCGGAGCA
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... tgcttgttagAGTGGACCGCCGCAGTACCGGAGCA