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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacaccattatctgttcaaaaataacttataacatgtttgtggtttattagtttatacacttgacttttatatattcaaccatgtaaatatttctcatgtttcgttttcagGCATGTTAAGCCTGTCAAGGGAAGGAAACTTAACTGGATGAAGGCTGCAATATTAGAATCAGACCGAGTACTCACTGTAAGTCCATACTATGCCCAGGAA

Basic information

species Glycine max
transcript GLYMA20G36040.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36040.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G32900.1 (Arabidopsis thaliana), 3'ss of exon 8
gtatgacaccattatctgttcaaaaataacttataacatgtttgtggtttattagtttatacacttgacttttatatattcaaccatgtaaatatttctcatgtttcgttttcagGCATGTTAAGCCTGTCAAGGGAAGGAAACTTAACTGGATGAAGGCTGCAATATTAGAATCAGACCGAGTACTCACTGTAAGTCCATACTATGCCCAGGAA
       ||   | |||  | || || |  | || |||   || ||  | ||  ||||         |  || || || |       |||| |     || |||| | |||||||| |||  ||||| || || ||| ||||| ||||||||||||||||||||||  | ||| |  |||| ||  | || || ||||||||||| || || |||
-----gtactggtttct-ctgaagaacagatcattacaccattttgtctcat--gttt-------caatcttaatttact-------gtaact-----tcttgttccattttcagGTATGAAAAGCCAGTAAAAGGACGGAAAATTAACTGGATGAAGGCTGCAATTCTGGAAGCTCACCGTGTCTTAACAGTTAGTCCATACTACGCTCAAGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208264254|gb|GE062582.1|GE062582
EST:     CTTCTCAATTTACCTAACAAATTCAAGAGCTCTTTTGACTTTACTGATGG                         GCATGTTAAGCCTGTCA
genomic: CTTCTCAATTTACCTAACAAATTCAAGAGCTCTTTTGACTTTACTGATGGgtatgacacc ... tcgttttcagGCATGTTAAGCCTGTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacttgacttttatatattcaaccatgtaaatatttctcatgtttcgttttcagGCATGTTAAGCCTGTCAAGGGAAGGAAACTTAACTGGATGAAGGCTGCAATATTAGAATCAGACCGAGTACTCACTGTAAGTCCATACTATGCCCAGGAA
  acttgac  putative branch site (score: 4)
                                           tttcgttttc  putative PPT
         ttttatatattcaacc  TA-rich tract