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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCACTTGAGGCACCAAGGGTTTTGAACTTAAACAGCAGCAAATATTTCTCAGGACCATATGgtatggctctctggtttattccttgatctttaatttcggtttagaaaaaactttaaatttagtttacaagctttttctgtcttcccgcag

Basic information

species Glycine max
transcript GLYMA20G36040.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36040.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G32900.1 (Arabidopsis thaliana), 5'ss of exon 6
GCAGCACTTGAGGCACCAAGGGTTTTGAACTTAAACAGCAGCAAATATTTCTCAGGACCATATGgtatggctctctggtttattccttgatctttaattt---cggttt-----agaaaaaactttaaatttagtttacaagctttttctgtcttcccgcag------
|| || ||||||||||||  |||| ||||| | ||||||||||| || ||||| ||||||||||||| |          | ||| ||  ||  ||||||     |||||     | | ||||||| || ||| |   |  | |     || |||  | |  |      
GCTGCTCTTGAGGCACCACAGGTTCTGAACCTGAACAGCAGCAAGTACTTCTCTGGACCATATGgtaaga------aaatgatttctcaattcttaattaaaatggtttctaaaaaataaaacttcaatttttgaaaagtaacaaagcctatctctctgatgttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208264254|gb|GE062582.1|GE062582
EST:     AGCAAATATTTCTCAGGACCATATG                         GCGAAGATGTAATTTTTATTGCCAATGATTGGCACACTGCCCTTCTTCCAT
genomic: AGCAAATATTTCTCAGGACCATATGgtatggctct ... cttcccgcagGCGAAGATGTAATTTTTATTGCCAATGATTGGCACACTGCCCTTCTTCCAT