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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggctctctggtttattccttgatctttaatttcggtttagaaaaaactttaaatttagtttacaagctttttctgtcttcccgcagGCGAAGATGTAATTTTTATTGCCAATGATTGGCACACTGCCCTTCTTCCATGCTACTTGAAATCAATGTACCAGACCAAGGGGATTTACAAAAACGCAAA

Basic information

species Glycine max
transcript GLYMA20G36040.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36040.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G32900.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatggctctctggtttattccttgatctttaattt---cggttt-----agaaaaaactttaaattt----agtttacaagctttttctgtct--tcccgcagGCGAAGATGTAATTTTTATTGCCAATGATTGGCACACTGCCCTTCTTCCATGCTACTTGAAATCAATGTACCAGACCAAGGGGATTTACAAAAACGCAAA
       |       | ||| ||  ||  ||||||     |||||     | | ||||||| || |||    |  | ||||    | ||| |||  |     ||| ||||||||| | ||| |||||||||| ||||||||||| || |||||||| ||| | ||||| ||||| ||  ||   ||  | ||||  || |||||
------gtaagaaaatgatttctcaattcttaattaaaatggtttctaaaaaataaaacttcaatttttgaaaagtaacaaagcctatctctctgatgttatagGTGAAGATGTAGTCTTTGTTGCCAATGACTGGCACACTGCTCTACTTCCATGTTACCTCAAATCTATGTATCAATCCCGCGGAGTCTACATGAATGCAAA

upper sequence: GLYMA20G36040.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv15s0048g02600.t01 (Vitis vinifera), 3'ss of exon 6
gtatggctctctggtttattccttgatctttaatttcggtttagaaaaaactttaaatttagtttacaagctttttctgtcttcccgcagGCGAAGATGTAATTTTTATTGCCAATGATTGGCACACTGCCCTTCTTCCATGCTACTTGAAATCAATGTACCAGACCAAGGGGATTTACAAAAACGCAAA
||  ||  | ||  | |  |  ||||      ||     |    || |||   | | |   | ||   |  |   |||  || |  ||||| ||||||||  |||| ||||| |||||||||||||||||||  ||  | |||||||||||  | ||||||     ||| ||||  ||   ||| || ||
gtg-ggaaccctcttgtgattattgaaaccagatactactgctaaagaaa---tgattcatgcttgatacttcaatcttcctgcatgcagGTGAAGATGTTGTTTTCATTGCTAATGATTGGCACACTGCCCCCCTAGCCTGCTACTTGAAGACCATGTACAGACTCAAAGGGAGATATGGAAATGCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208264254|gb|GE062582.1|GE062582
EST:     AGCAAATATTTCTCAGGACCATATG                         GCGAAGATGTAATTTTTATTGCCAATGATTGGCACACTGCCCTTCTTCCAT
genomic: AGCAAATATTTCTCAGGACCATATGgtatggctct ... cttcccgcagGCGAAGATGTAATTTTTATTGCCAATGATTGGCACACTGCCCTTCTTCCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcggtttagaaaaaactttaaatttagtttacaagctttttctgtcttcccgcagGCGAAGATGTAATTTTTATTGCCAATGATTGGCACACTGCCCTTCTTCCATGCTACTTGAAATCAATGTACCAGACCAAGGGGATTTACAAAAACGCAAA
                                   ctttttctgtcttccc  CT-rich tract
     ttagaaaaaactttaa  TA-rich tract