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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgatggattttccattgattatgtttgaggatttttttccttagtattggatgaaataatgaacacaatcaaatttttgcagCTTCTCAGAACGGGAAGTTACCACCATTACCTCGCAATTCAGAGAACAACGGAAGT

Basic information

species Glycine max
transcript GLYMA20G35970.2
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207762626|gb|GD732129.1|GD732129
EST:     TCTTATAATGAATCTGTTGAATAGCTTGCAAACTGCCGAGGCAATTGATA                         CTTCTCAGAACGGGAAGTTACCACCATTACCTCGCAATTCAGAGAACAACG
genomic: TCTTATAATGAATCTGTTGAATAGCTTGCAAACTGCCGAGGCAATTGATAgtgagtgatg ... atttttgcagCTTCTCAGAACGGGAAGTTACCACCATTACCTCGCAATTCAGAGAACAACG
EST: gi|18734158|gb|BM528020.1|BM528020
EST:     TCTTATAATGAATCTGTTGAATAGCTTGCAAACTGCCGAGGCAATTGATA                         CTTCTCAGAACGGGAAGTTACCACCATTACCTCGCAATTCAGAGAACAACG
genomic: TCTTATAATGAATCTGTTGAATAGCTTGCAAACTGCCGAGGCAATTGATAgtgagtgatg ... atttttgcagCTTCTCAGAACGGGAAGTTACCACCATTACCTCGCAATTCAGAGAACAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggatttttttccttagtattggatgaaataatgaacacaatcaaatttttgcagCTTCTCAGAACGGGAAGTTACCACCATTACCTCGCAATTCAGAGAACAACGGAAGT
                                              tttttgc  CT-rich tract
                                     acaatcaaattttt  TA-rich tract