1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
AATCGTGATATACGACGAGCTCCAAGCTTTAGTGGTCCATTAATGCTTCCAAACCGAGCTTCAGCAAATAGTTTATCAGCTCCAATCAAATCTTCTGGAGgtatttgaatcatcatgtacaccgtaaggctgtgtgcaagttttagtatttttcaaccagccatcttaaacacttggttttgattttgttcacccaactcctgctag
species | Glycine max |
transcript | GLYMA20G35970.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AACCGAGCTTACAGCAAATAGTTTATCAGCTCCAATCAAATCTTCTGGAG GATTCAGAGATTCCTTGGATGATAAGTCTAAGGEST: gi|208109628|gb|GD905302.1|GD905302
genomic: AACCGAGCTT-CAGCAAATAGTTTATCAGCTCCAATCAAATCTTCTGGAGgtatttgaat ... ctcctgctagGATTCAGAGATTCCTTGGATGATAAGTCTAAGG
EST: AAACCGAGCTTCAGCAAATAGTTTATCAGCTCCAATCAAATCTTCTGGAG GATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTAEST: gi|7693018|gb|AW761117.1|AW761117
genomic: AAACCGAGCTTCAGCAAATAGTTTATCAGCTCCAATCAAATCTTCTGGAGgtatttgaat ... ctcctgctagGATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTA
EST: CCAATCTAATCTTCTGGAG GATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTAEST: gi|7926554|gb|AW832580.1|AW832580
genomic: CCAATCAAATCTTCTGGAGgtatttgaat ... ctcctgctagGATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTA
EST: AAACCGAGCTTCAGCAAATAGTTTATCAGCTCCAATCAAATCTTCTGGAG GATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTAEST: gi|193412366|gb|FK381293.1|FK381293
genomic: AAACCGAGCTTCAGCAAATAGTTTATCAGCTCCAATCAAATCTTCTGGAGgtatttgaat ... ctcctgctagGATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTA
EST: AAACCGAGCTTCAGCAAATAGTTTATCAGCCCCAATCAAATCTTCTGGAG GATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTAEST: gi|193621788|gb|FK568590.1|FK568590
genomic: AAACCGAGCTTCAGCAAATAGTTTATCAGCTCCAATCAAATCTTCTGGAGgtatttgaat ... ctcctgctagGATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTA
EST: AAACCGAGCTTCAGCAAATAGTTTATCAGCCCCAATCAAATCTTCTGGAG GATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTA
genomic: AAACCGAGCTTCAGCAAATAGTTTATCAGCTCCAATCAAATCTTCTGGAGgtatttgaat ... ctcctgctagGATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCGTGATATACGACGAGCTCCAAGCTTTAGTGGTCCATTAATGCTTCCAAACCGAGCTTCAGCAAATAGTTTATCAGCTCCAATCAAATCTTCTGGAGgtatttgaatcatcatgtacaccgtaaggctgtgtgcaagttttagtatttttcaaccagccatcttaaacacttggttttgattttgttcacccaactcctgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC