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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttttagttttttttcttattaatcaaattgtccctatcgacaattttaactgacttcatattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG

Basic information

species Glycine max
transcript GLYMA20G35970.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207737653|gb|GD714171.1|GD714171
EST:     AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAGG                         GATATTCCTGTAAGTTCAGTTTCACGCCGATCTTCACAG
genomic: AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttt ... tattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
EST: gi|208109628|gb|GD905302.1|GD905302
EST:     AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAG                         GATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAGG
genomic: AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttt ... tattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAGG
EST: gi|208072541|gb|GD869815.1|GD869815
EST:     AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAG                         GATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
genomic: AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttt ... tattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
EST: gi|7926554|gb|AW832580.1|AW832580
EST:     AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAG                         GATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
genomic: AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttt ... tattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
EST: gi|193515754|gb|FK473344.1|FK473344
EST:     AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAG                         GATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
genomic: AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttt ... tattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
EST: gi|193412366|gb|FK381293.1|FK381293
EST:     AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAG                         GATATTCCTGTAAGTTCAGTTTCACGCCGATCTTCACAGGGAT
genomic: AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttt ... tattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAGGGAT
EST: gi|193621788|gb|FK568590.1|FK568590
EST:     AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAG                         GATATTCCTGTAAGTTCAGTTTCACGCCGATCTTCACAG
genomic: AAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttt ... tattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttattaatcaaattgtccctatcgacaattttaactgacttcatattgaatagGATATTCCTGTAAGTTCAGTTTCGCGCCGATCTTCACAG
                                  aactgac  putative branch site (score: 2)
     ttaatcaaatt  TA-rich tract