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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGTCAGTCCTCCAATGATTCTGCCAATATCAATATTCCTGCATCACTTTTAGTGCCTCATCTTCACAATCTTTTTCAGCAGACATCTATTCAACAGgtgagggaagccttaagtttgagcaatgtcatataatttgctagtgtgtgcctgctggaaagctgatcattatgtaacttttccaatttataatcatactggaaagttctgtttaattccag

Basic information

species Glycine max
transcript GLYMA20G35970.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35970.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv02s0025g02480.t01 (Vitis vinifera), 5'ss of exon 17
AATTGGTCAGTCCTCCAATG-ATTCTGCCAATATCAATATTCCTGCATCACTTTTAGTGCCTCATCTTCACAATCTTTTTCAGCAGACATCTATTCAACAGgtgagggaagccttaagtttgagcaatgtcatataatttgctagtgtgtgcctgctggaaagctgatcattatgtaacttttccaatttataatcatactggaaagttctgtttaattccag
      ||| | | |||| | | | |  ||| |  ||| | || ||||||||| |  ||||||| ||||| ||||||||||||||||| ||  |||||||||| ||| |    | |  |     | ||||    |  ||   ||   |  |  |  |  |||  || || |  || || |      ||||    | ||||  |                    
-----CTCACTACACCAAAGGACTTTAGCAACAGTAATGTACCCGCATCACTTCTCATGCCTCACCTTCAGAATCTTTTTCAGCAGACCTCACTTCAACAGgtaaggcataattgatttccacactatgtt---tgcttccataagctcaggttttt--aaacttgctcttactggaaata----gattttc--tgataccag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207762626|gb|GD732129.1|GD732129
EST:     TTTTAGTGCCTCATCTTCACAATCTTTTTCAGCAGACATCTATTCAACAG                         GATCTTATAATGAATCTGTTGAATAGCTTGCAAACTGCCGAGGCAATTGAT
genomic: TTTTAGTGCCTCATCTTCACAATCTTTTTCAGCAGACATCTATTCAACAGgtgagggaag ... ttaattccagGATCTTATAATGAATCTGTTGAATAGCTTGCAAACTGCCGAGGCAATTGAT
EST: gi|18734158|gb|BM528020.1|BM528020
EST:     TTTTAGTGCCTCATCTTCACAATCTTTTTCAGCAGACATCTATTCAACAG                         GATCTTATAATGAATCTGTTGAATAGCTTGCAAACTGCCGAGGCAATTGAT
genomic: TTTTAGTGCCTCATCTTCACAATCTTTTTCAGCAGACATCTATTCAACAGgtgagggaag ... ttaattccagGATCTTATAATGAATCTGTTGAATAGCTTGCAAACTGCCGAGGCAATTGAT
EST: gi|7926554|gb|AW832580.1|AW832580
EST:     TTTTAGTGCCTCATCTTCACAATCTTTTTCAGCAGACATCTATTCAACAG                         GATCTTATAATGAATCTGTTGAATAGCTTGCAAACTGCCGAGGCAATTGAT
genomic: TTTTAGTGCCTCATCTTCACAATCTTTTTCAGCAGACATCTATTCAACAGgtgagggaag ... ttaattccagGATCTTATAATGAATCTGTTGAATAGCTTGCAAACTGCCGAGGCAATTGAT