Sequence
atgc intronic sequence ATGC exonic sequenceGGCAACCCTCCTTATACAACCACTGTTGATGATCCCAGTTCTTCATATTCTCCTTATTTACCACCAGTTCTTGAAGAACCTTCTTCTTCATTTTCTGAGGgtaagtaatcaccttttaagctttacaatacattcagagccttgctgttggccattccaaattgaataaatcatgatgcag
Basic information
species | Glycine max |
transcript | GLYMA20G35770.5 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G35770.4 (Glycine max), 5'ss of exon 13
lower sequence: AT5G23490.1 (Arabidopsis thaliana), 5'ss of exon 12
GGCAACCCTCCTTATACAACCACTGTTGATGATCCCAGTTCTTCATATTCTCCTTATTTACCACCAGTTCTTGAAGAACCTTCTTCTTCATTTTCTGAGGgtaagtaatcaccttttaagctttacaatacattcagagccttgctgttggccattccaaattgaataaatcatgatgcag
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CAAAATCCATCATATGGGTCTGCGTTTGATGACCCAAGCTCCTCAAATTCTCCTCTTTTGTCCCCAGTTTTTGAAGAACCTTCTTCCTCCTTTTCTGAGGgtaatgattaacaatactaattcca--------ttatggtctt-tcacttgtctcaatattttgaaccactgttgacag--
upper sequence: GLYMA20G35770.4 (Glycine max), 5'ss of exon 13
lower sequence: AT5G08440.2 (Arabidopsis thaliana), 5'ss of exon 13
---GGCAACCCTCCTTATACAACCACTGTTGATGATCCCAGTTCTTCATATTCTCCTTATTTACCACCAGTTCTTGAAGAACCTTCTTCTTCATTTTCTGAGGgtaa-------gtaatcaccttttaagctttacaatacattcagagccttgctgttggccattccaaattgaataaatcatgat--gcag
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TTGGAAAATTCGACTTATGTGG---CTGTCGATGATCCAAGCCCTTCAAATTATCCGATTTTGGCCCCAGTTCTTGAAGAGCCATCTTCATCATTTTCTGAGGgtaatggtttaataacaatgatagtgacattataacaattccatcaccgtctttcactttgttttaaatattgtgaattacttttggcag
upper sequence: GLYMA20G35770.4 (Glycine max), 5'ss of exon 13
lower sequence: Vv07s0130g00420.t01 (Vitis vinifera), 5'ss of exon 12
---GGCAACCCTCCTTATACAACCACTGTTGATGATCCCAGTTCTTCATATTCTCCTTATTTACCACCAGTTCTTGAAGAACCTTCTTCTTCATTTTCTGAGGgtaagtaatcacctt---ttaagcttta-caatacattcagagccttgctgt----tggccattccaaattgaataaatcatgat--gcag
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TCGGGAAGCTCTCCTTACACGGCCCCACTTGAGGATCCCAGC---TCATATTCTCCTTATTTACCACCAGTTCTTGAAGAGCCTTCTTCATCTTTTTCTGAAGgtgaaaaatcatttaacattgaactttagttgtagatttaagaattttttttgacttggctattgcacattaaatacatttcaatttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21888872|gb|BQ742085.1|BQ742085EST: TCCTTATTTACCACCAGTTCTTGAAGAACCTTCTTCTTCATTTTCTGAGG CTGCAGATGAAGATCCATTGCCGGCTATAGAGGGTCTTCAAATTTCAGGAG
genomic: TCCTTATTTACCACCAGTTCTTGAAGAACCTTCTTCTTCATTTTCTGAGGgtaagtaatc ... catgatgcagCTGCAGATGAAGATCCATTGCCGGCTATAGAGGGTCTTCAAATTTCAGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCAACCCTCCTTATACAACCACTGTTGATGATCCCAGTTCTTCATATTCTCCTTATTTACCACCAGTTCTTGAAGAACCTTCTTCTTCATTTTCTGAGGgtaagtaatcaccttttaagctttacaatacattcagagccttgctgttggccattccaaattgaataaatcatgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC