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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaattttttctgttacagttgcggatgattctttctctgattatgtttgacattgtgtttttggaattgtagCATGCAAATGGAGAAAATGCATGGATGGGCATAAATGGAAATACTGGTGACATCACTGACATGAAAGAGTGCAAG

Basic information

species Glycine max
transcript GLYMA20G35760.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35760.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv17s0000g08170.t01 (Vitis vinifera), 3'ss of exon 11
------------------------gtaagaattttttctg--ttacagttgcggatgattctttctctgattatgtttgacattgtgtttttggaattgtagCATGCAAATGGAGAAAATGCATGGATGGGCATAAATGGAAATACTGGTGACATCACTGACATGAAAGAGTGCAAG
                         |  | || ||       | | | ||    |    |||||       |||||||   |||   | |||     | |||||||||||||| |||||||| ||||| || ||| |||||| ||||||||  || ||||||||||| ||| | |||
tcgggcaattactcagcattgtttttctgcatcttcggaaaataaaaatttaacacatctcttttgtctcgtatgtttcttattccatcttttt--ctctagCATGCAAATGGTGAAAATGCCTGGATCGGAATAGATGGAAGTACTGGTGCAATTACTGACATGAAGGAGCGTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgcggatgattctttctctgattatgtttgacattgtgtttttggaattgtagCATGCAAATGGAGAAAATGCATGGATGGGCATAAATGGAAATACTGGTGACATCACTGACATGAAAGAGTGCAAG
                           gtttgac  putative branch site (score: 4)
                      attatgttt  TA-rich tract