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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATGACAAAGCTTTGGAGGATGCCATTGCTGTCCTTGACAAAATTGCTATGCCCGTTGATGCCAATGATCgtaagttttgttgctatttctctttttctttttattcttctcattttttaggagtgcaggagggtaacatccttttcttattccttatgatttgcagaaa...

Basic information

species Glycine max
transcript GLYMA20G35760.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35760.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G175510_T01 (Zea mays), 5'ss of exon 7
CTTATGACAAAGCTTTGGAGGATGCCATTGCTGTCCTTGACAAAATTGCTATGCCCGTTGATGCCAATGATCgtaagttttgttgctatttctctttttctttttattcttctcattttttaggagtgcaggagggtaacatccttttcttattccttatgatttgcagaaa---------------------------------------
| ||   ||||||  | || ||||| |||||||| |||||||||||||| ||||| |||||||  ||||||||||||||| |  |  |  | | |||||| |   || |      ||    |   |  ||   | |    | || |||| | || | |    | ||    ||                                       
CATACACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAATGCCGGTTGATGTGAATGATCgtaagttt-gcagtgaaatatatttttcctgg-atccgggcacttcaccaatggcacatttgtgctttagccctttcctcttgcgtgcactatgtgttaaaaaattatactgatgtcaccgaatttaccattaatgcag

upper sequence: GLYMA20G35760.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G069765_T02 (Zea mays), 5'ss of exon 7
CTTATGACAAAGCTTTGGAGGATGCCATTGCTGTCCTTGACAAAATTGCTATGCCCGTTGATGCCAATGATCgtaagttttgttgctatttctctttttctttttattcttctcattttttaggagtgcaggagggtaaca--tccttttcttattccttatgatttgcagaaa----------------------------------
| |||  ||||||  | || ||||| |||||||| |||||||||||||| ||| | |||||||  |||||||||||||||    |  |       |||| |  |   || |  || ||| |    ||    |    || |   ||| | |   || |   |||  || || ||                                   
CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAATGGCTGTTGATGTGAATGATCgtaagttt-acagtgaacatatattttgtactggatcctggcactttgtcaatgtcacaggaattagctcttccctcttgcatacaccatgtgttacacaattagactgatgtcaccaaatatactgttaatgcag