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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctgtctataagtattaatcaatggttcttttcttttctaaaaggatatcagattgtatacgatgacttttataataatgttatctgcagCTTATGACAAAGCTTTGGAGGATGCCATTGCTGTCCTTGACAAAATTGCTATGCCCGTTGATGCCAATGATC

Basic information

species Glycine max
transcript GLYMA20G35760.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35760.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G175510_T01 (Zea mays), 3'ss of exon 6
gtaatctgtctataagtattaatcaatggttcttttcttttctaaaaggatatcagattgtatacgatgacttttataa-taatgtt-----atctgcagCTTATGACAAAGCTTTGGAGGATGCCATTGCTGTCCTTGACAAAATTGCTATGCCCGTTGATGCCAATGATC
||||  |  || ||         |    |||   |    |  ||   |  | | |   |  ||    || ||| |  || | || ||     |||| |||| ||   ||||||  | || ||||| |||||||| |||||||||||||| ||||| |||||||  |||||||
gtaagattcctttattctcagtactgcagtttactagggtaatacttgacttttattcttgatctcttgtcttctggaacttatattttctcatcttcagCATACACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAATGCCGGTTGATGTGAATGATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaaaaggatatcagattgtatacgatgacttttataataatgttatctgcagCTTATGACAAAGCTTTGGAGGATGCCATTGCTGTCCTTGACAAAATTGCTATGCCCGTTGATGCCAATGATC
 ttctaaa  putative branch site (score: 2)
                           atgacttttataataa  TA-rich tract