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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGTTGTTGTTCAGCGTATAGAAGAAAGATTATCCGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAGgtattgtcttgttataaattatagccttttctttcacatgctaatctctttatactaatttaggattgaaatttgatatggagacaattatgtttgcatg...

Basic information

species Glycine max
transcript GLYMA20G35750.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35750.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g44620.1 (Oryza sativa), 5'ss of exon 6
TCAAGTTGTTGTTCAGCGTATAGAAGAAAGATTATCCGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAGgta---ttgtcttgttataaat-tatagccttttctttcacatgctaatctctttatactaatttaggattgaaatttgatatggagacaattatgtttgcatg
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TCAAGTGGTTGTTCAGCGTATTGATGAAAGGCTATCTGCGCTTGGCAATTGTGTAGCTTGCAATGACCATGTCGCGCTTACACACCCTGACCTCGACAAGgtaagcctatcttcgtatatctctctagtgatgtttcttg---acttaatgcttttccctattgt----ctcgaactaaatatgcctgctgctcaattctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297507|gb|FG989889.1|FG989889
EST:     GTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAG                         GAAACTGAGGAGATGATTGCAGATGTTCTGGGAGTAGAAGTTT
genomic: GTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAGgtattgtctt ... ttttgttcagGAAACTGAGGAGATGATTGCAGATGTTCTGGGAGTAGAAGTTT