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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccaatgtaccctaatacccattttctgtttctgaattttgaatgtaaatttattatctttttgttgtcgtagTGTTGGGAAATGAGGTGGAGGAGTTGAACCTTTTGCATGTGCATGAAGCTTGATGCTTATTCGTATATTAGAACTAGATAGCCAATACAAGTTTGTTACT

Basic information

species Glycine max
transcript GLYMA20G35750.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297507|gb|FG989889.1|FG989889
EST:     TGCACCCGGTGAGCGGTGACCTCCTCCGCTTTGATCTTCTTCTGTCCAGG                         TGTTGGGAAATGAGGTGGAGGAGTTGAACCTTTTGCATGTGCATGAAGCTT
genomic: TGCACCCGGTGAGCGGTGACCTCTTCCGCTTTGATCTTCTTCTGTCCAGGgtaaccaatg ... gttgtcgtagTGTTGGGAAATGAGGTGGAGGAGTTGAACCTTTTGCATGTGCATGAAGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattttctgtttctgaattttgaatgtaaatttattatctttttgttgtcgtagTGTTGGGAAATGAGGTGGAGGAGTTGAACCTTTTGCATGTGCATGAAGCTTGATGCTTATTCGTATATTAGAACTAGATAGCCAATACAAGTTTGTTACT
                                      tctttttgtt  CT-rich tract
          tttctgaattttgaat  TA-rich tract