Sequence
atgc intronic sequence ATGC exonic sequenceGACTTCAGTTTGAGAATAATTGTGAAGTTGGAGTCTTCTCAAAACTTACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCCGAAAACTTCTACAGgttctcattcattttggactagtgaaaatagttcccttgttgatttaaattctttgtgcttggtttcaaatggatggaaattgccataacatttctccatatgaataaattagtgggttgtttgatacag
Basic information
species | Glycine max |
transcript | GLYMA20G35750.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G35750.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os07g44620.1 (Oryza sativa), 5'ss of exon 3
GACTTCAGTTTGAGAATAATTGTGAAGTTGGAGTCTTCTCAAAACTTACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCCGAAAACTTCTACAGgttctcattcattttggactagtgaaaatagttcccttgttgatttaaattctttgtgcttggtttcaaatggatggaaattgccataacatttctccatatgaataaattagtgggttgtttgatacag
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GTATTCAGTTTGAGAACAATTGTGAAGTTGGTGTTTTCTCCAAGTTGACAAATGCCTATTGTCTTGTTGCAATTGGAGGATCAGAGAACTTCTACAGgtgcatatt-----ttgtcagtttaagatg------ttgggaaattat-ttgtggaagcgtgggaatgcctaactcataactgctgcattatttgttattttgcag------------------------
upper sequence: GLYMA20G35750.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G318475_T04 (Zea mays), 5'ss of exon 3
GACTTCAGTTTGAGAATAATTGTGAAGTTGGAGTCTTCTCAAAACTTACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCCGAAAACTTCTACAGgttc-tcattcattttggactagtgaaaatagttcccttgttgatttaaattctttgtgcttggtttcaaatggatggaaattgccataacat-ttctccatatgaataaattagtgggttgtttgatacag
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GTATCCAGTTTGAGAACAACTGTGAAATTGGTGTTTTCTCCAAGCTGACAAATGCTTACTGTCTGGTAGCGATTGGAGGGTCAGAGAACTTCTACAGgttagtcttacatatt---tctttgagacttgacatttgggtcattgggctcctttgg--tggaagtggatgaaatgctaactctaacagtgtgttctcctaatg--ttgtccag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192297507|gb|FG989889.1|FG989889EST: ACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCCGAAAACTTCTACAG TGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAGACCTCCAT
genomic: ACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCCGAAAACTTCTACAGgttctcattc ... tttgatacagTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAGACCTCCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACTTCAGTTTGAGAATAATTGTGAAGTTGGAGTCTTCTCAAAACTTACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCCGAAAACTTCTACAGgttctcattcattttggactagtgaaaatagttcccttgttgatttaaattctttgtgcttggtttcaaatggatggaaattgccataacatttctccatatgaataaattagtgggttgtttgatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG