Sequence
atgc intronic sequence ATGC exonic sequencegttctcattcattttggactagtgaaaatagttcccttgttgatttaaattctttgtgcttggtttcaaatggatggaaattgccataacatttctccatatgaataaattagtgggttgtttgatacagTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTG
Basic information
species | Glycine max |
transcript | GLYMA20G35750.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G35750.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os07g44620.1 (Oryza sativa), 3'ss of exon 3
gttctcattcattttggactagtgaaaatagttcccttgttgatttaa-attctttgtgcttggtttcaaatggatggaaattgccataacatttctccatatgaataaattagtgggttgtttgatacagTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTG
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---------------------------gtgcatattttgtcagtttaagatgttgggaaattatttgtggaagcgtgggaatgcctaactcataactgc---tgcattattt-----gttattt--tgcagTGCCTTTGAATCTGAGCTCGCAGATGTTATTCCTGTTGTCAAGACCTCCATAGGTGGTACTAGAATAATTGGTCGTCTCTGTGTCG
upper sequence: GLYMA20G35750.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G318475_T04 (Zea mays), 3'ss of exon 3
gttctcattcattttggactagtgaaaatagttcccttgttgatttaaattctttgtgcttggtttcaaatggatggaaattgccataacatttctccatatgaataaattagtgggttgtttgatacagTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTG--------------
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-----------------gttagtcttacatatttctttga-gacttgacatttgggtcattgggctcctttgg-tggaagtggatgaaatgctaactc-taacagtgtgttctcctaatgtt--gtccagTGCCTTTGAGGCTGAGCTTGCAGATGCCATCCCTGTGGTCAAGACCTCTATTGGTGGCACTAGAATAATAGGCCGACTTTGTGTTGGTTAATATCTGAAA
upper sequence: GLYMA20G35750.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G318475_T02 (Zea mays), 3'ss of exon 3
gttctcattcattttggactagtgaaaatagttcccttgttgatttaaattctttgtgcttggtttcaaatggatggaaattgccataacatttctccatatgaataaattagtgggttgtttgatacagTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTG
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-----------------gttagtcttacatatttctttga-gacttgacatttgggtcattgggctcctttgg-tggaagtggatgaaatgctaactc-taacagtgtgttctcctaatgtt--gtccagTGCCTTTGAGGCTGAGCTTGCAGATGCCATCCCTGTGGTCAAGACCTCTATTGGTGGCACTAGAATAATAGGCCGACTTTGTGTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192297507|gb|FG989889.1|FG989889EST: ACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCCGAAAACTTCTACAG TGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAGACCTCCAT
genomic: ACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCCGAAAACTTCTACAGgttctcattc ... tttgatacagTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAGACCTCCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggaaattgccataacatttctccatatgaataaattagtgggttgtttgatacagTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTG
atatgaataaattagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttctcattcattttggactagtgaaaatagttcccttgttgatttaaattctttgtgcttggtttcaaatggatggaaattgccataacatttctccatatgaataaattagtgggttgtttgatacagTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAGACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG