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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCATAGATGCCATCAAAGAAGAGCTTGAAAGACAATGCCCTGGGGTGGTTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatattcaacttaaataatacattactgttttctttgtaactaatttccctttttctcttttgtggtgcaatgaagtagtttattgatgtaacgtggcttgaaattgattatgattatgaaatatgaacag

Basic information

species Glycine max
transcript GLYMA20G35680.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398547|gb|EV268418.1|EV268418
EST:     TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTCTTCTTT                         GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: gi|192316791|gb|FK006494.1|FK006494
EST:     TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT                         GCTGGAG-CCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: gi|16348557|gb|BI974152.1|BI974152
EST:     TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT                         GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: gi|254319125|gb|GR828853.1|GR828853
EST:     GCAGTTTTCTTT                         GCTGGAGGCCCAGTGTTATGACATACCTAAA-GAAG-AAGGATGGAAGAAG
genomic: GCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTG-TATGACATACCTAAAGGAAGAAAGGATGGAAGAAG
EST: gi|254319124|gb|GR828852.1|GR828852
EST:     TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT                         GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: gi|192312757|gb|FK005397.1|FK005397
EST:     TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT                         GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: gi|192322806|gb|FK014497.1|FK014497
EST:     TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT                         GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: gi|19453326|gb|BM954736.1|BM954736
EST:     TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT                         GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: gi|209697968|gb|BW672821.1|BW672821
EST:     TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT                         GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: gi|192312758|gb|FK005398.1|FK005398
EST:     TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT                         GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: gi|192316790|gb|FK006493.1|FK006493
EST:     TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT                         GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: gi|19453138|gb|BM954548.1|BM954548
EST:     TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT                         GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTCATAGATGCCATCAAAGAAGAGCTTGAAAGACAATGCCCTGGGGTGGTTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatattcaacttaaataatacattactgttttctttgtaactaatttccctttttctcttttgtggtgcaatgaagtagtttattgatgtaacgtggcttgaaattgattatgattatgaaatatgaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG