1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagatattcaacttaaataatacattactgttttctttgtaactaatttccctttttctcttttgtggtgcaatgaagtagtttattgatgtaacgtggcttgaaattgattatgattatgaaatatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGATCCAAAATTGAGGATACTATCAATTTGCCATTCCCTACTTTCAATGCCT
species | Glycine max |
transcript | GLYMA20G35680.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTCTTCTTT GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGAEST: gi|192316791|gb|FK006494.1|FK006494
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT GCTGGAG-CCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGAEST: gi|16348557|gb|BI974152.1|BI974152
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGAEST: gi|254319125|gb|GR828853.1|GR828853
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: GCAGTTTTCTTT GCTGGAGGCCCAGTGTTATGACATACCTAAA-GAAG-AAGGATGGAAGAAGEST: gi|254319124|gb|GR828852.1|GR828852
genomic: GCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTG-TATGACATACCTAAAGGAAGAAAGGATGGAAGAAG
EST: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGAEST: gi|192312757|gb|FK005397.1|FK005397
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGAEST: gi|192322806|gb|FK014497.1|FK014497
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGAEST: gi|19453326|gb|BM954736.1|BM954736
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGAEST: gi|209697968|gb|BW672821.1|BW672821
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGAEST: gi|192312758|gb|FK005398.1|FK005398
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGAEST: gi|192316790|gb|FK006493.1|FK006493
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGAEST: gi|19453138|gb|BM954548.1|BM954548
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
EST: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTT GCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
genomic: TTTCATGCGCTGATATTCTTGCCATGGCTGCTAGAGATGCAGTTTTCTTTgtaagatatt ... atatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGA
tagtttattgatgtaacgtggcttgaaattgattatgattatgaaatatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGATCCAAAATTGAGGATACTATCAATTTGCCATTCCCTACTTTCAATGCCT
ttgaaattgattatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatattcaacttaaataatacattactgttttctttgtaactaatttccctttttctcttttgtggtgcaatgaagtagtttattgatgtaacgtggcttgaaattgattatgattatgaaatatgaacagGCTGGAGGCCCAGTGTATGACATACCTAAAGGAAGAAAGGATGGAAGAAGATCCAAAATTGAGGATACTATCAATTTGCCATTCCCTACTTTCAATGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT