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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACCTGTTGTTAAGAACATTGTCAACAGAGCTTTGCAGGATGATCCCACCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAGgtttcttctctctctctctctcacacactcactcagtacagaaagttcactcacatatggatgtactagcacactttgcatgttttaaagggaaaagaga...

Basic information

species Glycine max
transcript GLYMA20G35680.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398547|gb|EV268418.1|EV268418
EST:     CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAG                         GGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
genomic: CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAGgtttcttctc ... ttggtattagGGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
EST: gi|192316791|gb|FK006494.1|FK006494
EST:     CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAG                         GGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
genomic: CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAGgtttcttctc ... ttggtattagGGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
EST: gi|16348557|gb|BI974152.1|BI974152
EST:     CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAG                         GGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
genomic: CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAGgtttcttctc ... ttggtattagGGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
EST: gi|254319124|gb|GR828852.1|GR828852
EST:     CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAG                         GGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
genomic: CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAGgtttcttctc ... ttggtattagGGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
EST: gi|192312757|gb|FK005397.1|FK005397
EST:     TCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAG                         GGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
genomic: CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAGgtttcttctc ... ttggtattagGGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
EST: gi|192322806|gb|FK014497.1|FK014497
EST:     CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAG                         GGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
genomic: CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAGgtttcttctc ... ttggtattagGGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
EST: gi|19453326|gb|BM954736.1|BM954736
EST:     CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAG                         GGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
genomic: CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAGgtttcttctc ... ttggtattagGGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
EST: gi|209697968|gb|BW672821.1|BW672821
EST:     CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAG                         GGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
genomic: CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAGgtttcttctc ... ttggtattagGGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
EST: gi|192312758|gb|FK005398.1|FK005398
EST:     TCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAG                         GGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
genomic: CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAGgtttcttctc ... ttggtattagGGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
EST: gi|192316790|gb|FK006493.1|FK006493
EST:     CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAG                         GGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
genomic: CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAGgtttcttctc ... ttggtattagGGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
EST: gi|19453138|gb|BM954548.1|BM954548
EST:     CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAG                         GGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA
genomic: CCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAGgtttcttctc ... ttggtattagGGATGCGATGGCTCTGTTCTGATTGACTCCACTAAGGATAATACAGCAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAACCTGTTGTTAAGAACATTGTCAACAGAGCTTTGCAGGATGATCCCACCCTAGCAGCTGGTCTGATTAGAATGCACTTTCACGACTGCTTCATTGAGgtttcttctctctctctctctcacacactcactcagtacagaaagttcactcacatatggatgtactagcacactttgcatgttttaaagggaaaagaga

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaga