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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTTCGGGAAACCCATCCCCATCAATCTTATTGTTGCTGTTGTTGCTGAGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaacatttttgttactgagggaaggttattattttttcaaacgaactctcttgattcatacttaagtcagttaagtgcatgatgggaatgcatattaccaccctattcatatattttaacagaaattcatcagttgatttactgaaagtgacctattccttatag

Basic information

species Glycine max
transcript GLYMA20G35530.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35530.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0089g01170.t01 (Vitis vinifera), 5'ss of exon 6
CTACTTCGGGAAACCCATCCCCATCAATCTTATTGTTGCTGTTGTTGCTGAGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaacatttttgttactgagggaaggttattattttttcaaacgaactctcttgattcatacttaagtcagttaagtgcatgatgggaatgcatattaccaccctattcatatattttaacagaaattcatcagttgatttactgaaagtgacctattccttatag
 |||||||| ||   ||||||||| || |||||| ||||||| || |||||| | |||||||| |||||||||||||||||||||||||| |||||| |||||| ||| |  | |  |           ||||    | ||||||    |  || ||   |  || |||  |    |||     || |        | | ||||  |  ||   | ||| |||                                               
TTACTTCGGAAAGAACATCCCCATTAACCTTATTTTTGCTGTCGTCGCTGAGGTTGTTCTTGTTGGTGGTGCTGAGTACTACAGAATAATCAATGGCTTGgtatataa-acctctactc----------gttacatatctttcaat---atcctttt--cttgta-ttagatgttctaaagaggtgttca------acaataccttctgataattgtatatta-----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209727197|gb|BW655235.1|BW655235
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|22933515|gb|BU550654.1|BU550654
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|24135389|gb|BU925899.1|BU925899
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|31305455|gb|CD390658.1|CD390658
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|31464590|gb|CD406618.1|CD406618
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|20814435|gb|BQ298913.1|BQ298913
EST:     GAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: GAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|31305180|gb|CD390383.1|CD390383
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|31312504|gb|CD397707.1|CD397707
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|9898921|gb|BE607889.1|BE607889
EST:     GATAGTTCTTGGGGGTGGTGCTGAGTACTACAGAATTAAT-AATGGCCTG                         GATTTTGAAGACAAGCTTCATCCA
genomic: GATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAAT-AATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCA
EST: gi|209697501|gb|BW670002.1|BW670002
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|31470972|gb|CD413000.1|CD413000
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|209715031|gb|BW650882.1|BW650882
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|214005601|gb|DB984609.1|DB984609
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|31475874|gb|CD417902.1|CD417902
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|209727225|gb|BW655236.1|BW655236
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|8670142|gb|BE191249.1|BE191249
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         AATTTGGGAGACAAGCTTCATCCAGGTGGTCCATTTGACCCCATTGG-CCT
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCC-ATTGGGCCT
EST: gi|192293843|gb|FG986052.1|FG986052
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|209717865|gb|BW669004.1|BW669004
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|213606035|gb|DB980187.1|DB980187
EST:     GATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCTCT-                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCT
genomic: GATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGC-CTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCT
EST: gi|209715030|gb|BW650881.1|BW650881
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATC
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATC
EST: gi|31309414|gb|CD394617.1|CD394617
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACCGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|213606013|gb|DB980165.1|DB980165
EST:     AGGTAGTTCTTGTGGGTTGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|20813004|gb|BQ297482.1|BQ297482
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|31474651|gb|CD416679.1|CD416679
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTTATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|13480449|gb|BG509792.1|BG509792
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|31460969|gb|CD402997.1|CD402997
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|31470087|gb|CD412115.1|CD412115
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTTATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
EST: gi|213595532|gb|DB962430.1|DB962430
EST:     AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTG                         GATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA
genomic: AGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATAATTAATGGCCTGgtatgtaaca ... ttccttatagGATTTGGAAGACAAGCTTCATCCAGGTGGTCCATTTGACCCATTGGGCCTA