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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaagatctgtcaattgtcacccctgttaaattcattaatacactgattttatgactcaacaaattaagtatttagaaatacctgataacacaatt...

Basic information

species Glycine max
transcript GLYMA20G35530.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35530.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G10340.1 (Arabidopsis thaliana), 5'ss of exon 4
TCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgca---agatctg---tcaattgtcacccctg-ttaaattcattaata---cactgattttatgactcaacaaattaagtatttagaaatacctgataacacaatt
 ||||| |||||||| ||| | || || ||||| |||||||||||||| || || |||||||| || ||||||||||| ||||| ||||| ||||| ||||||       |  |||    |  |||  ||  |    ||| |||| |||  |   ||   || |  |||    |  |  |   | |||    |   |||||  ||     
CCATGCGAGATGGGCTATGTTAGGAGCAGCTGGTTTCATCATTCCTGAAGCTTTAAACAAATATGGCGCTAACTGTGGCCCTGAAGCTGTCTGGTTTAAGgttcttgcctacgtctaatctttatttacattcagacttagattctttagcaaagcaagaatgtgttgatgtgatgagatggttctttttggaatactgattgcag----

upper sequence: GLYMA20G35530.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0089g01170.t01 (Vitis vinifera), 5'ss of exon 5
TCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaagatctgtcaattgtcacccctgttaaattcattaatacactgattttatgactcaacaaattaagtatttagaaatacctgataacacaatt-------
 || ||| | ||||| ||||| || || ||||| |||||||| ||||||||||| ||||||| ||| || ||||| || ||||| ||||| |||||||||||||||    |   | ||   |  ||  |   |||||| | || | | | ||        ||     |||  ||| |   | |     |  ||  | |         
CCACGCCCGGTGGGCTATGCTCGGCGCAGCTGGCTTCATCATCCCTGAGGCCTTCAACAAATTCGGTGCCAACTGCGGCCCTGAAGCTGTGTGGTTCAAGgtttgc----ttccttaac--ttcccttttccaaattcctcaaaaaatttatccaccctttccttggattt-gtactcccacaagaaggggaattcgaggaaggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209727197|gb|BW655235.1|BW655235
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|209707832|gb|BW683728.1|BW683728
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|209697500|gb|BW670001.1|BW670001
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACC-
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|15284925|gb|BI468816.1|BI468816
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGANGCTGTTTGGTTCAAT                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGGACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|24135389|gb|BU925899.1|BU925899
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|31305455|gb|CD390658.1|CD390658
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|31464590|gb|CD406618.1|CD406618
EST:     GGAGCTAACTGTGGTCCTGAGTCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACATTGAACTACTTCGGGAAACCC
genomic: GGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|15662304|gb|BI699675.1|BI699675
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|31305180|gb|CD390383.1|CD390383
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|31312504|gb|CD397707.1|CD397707
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|9898921|gb|BE607889.1|BE607889
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCCGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|213597770|gb|DB960327.1|DB960327
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|209697501|gb|BW670002.1|BW670002
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|19270057|gb|BM886313.1|BM886313
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|31470972|gb|CD413000.1|CD413000
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|209715031|gb|BW650882.1|BW650882
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|31561294|gb|CD487132.1|CD487132
EST:     CCTTTAACAAATACGGAGCTCACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAAGCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|17962784|gb|BM269541.1|BM269541
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|23064373|gb|BU579146.1|BU579146
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|31561507|gb|CD487345.1|CD487345
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|31475874|gb|CD417902.1|CD417902
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|209727225|gb|BW655236.1|BW655236
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|15286458|gb|BI470349.1|BI470349
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|8670142|gb|BE191249.1|BE191249
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|192293843|gb|FG986052.1|FG986052
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGTTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|213612114|gb|DB956851.1|DB956851
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|209717865|gb|BW669004.1|BW669004
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|17401712|gb|BM178494.1|BM178494
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|209715030|gb|BW650881.1|BW650881
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|8670152|gb|BE191259.1|BE191259
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTNTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|31309414|gb|CD394617.1|CD394617
EST:     ATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCCGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: ATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|20813004|gb|BQ297482.1|BQ297482
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|17518866|gb|BM187908.1|BM187908
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|31474651|gb|CD416679.1|CD416679
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|15285366|gb|BI469257.1|BI469257
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|31460969|gb|CD402997.1|CD402997
EST:     C-TTAACGAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CTTTAAC-AAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|31470087|gb|CD412115.1|CD412115
EST:     CTTTAACAAATACGGAGCTAACTGTGGTCCTCGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CTTTAACAAATACGGAGCTAACTGTGGTCCT-GAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|213595532|gb|DB962430.1|DB962430
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
EST: gi|213595421|gb|DB962403.1|DB962403
EST:     CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAG                         ACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC
genomic: CCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaaga ... atcaatgcagACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaagatctgtcaattgtcacccctgttaaattcattaatacactgattttatgactcaacaaattaagtatttagaaatacctgataacacaatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacccct