1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACCGTTGCGCTTTTCTCCAAGAAGAAGGCAGCACCACCTCCTCCAAAGAAAAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcactctcccaactccaatggccatctgtttctacacattctcgttttcttttcttaacaataaatagggtgtttggattcatgttagattatcc...
species | Glycine max |
transcript | GLYMA20G35530.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|209707832|gb|BW683728.1|BW683728
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|209697500|gb|BW670001.1|BW670001
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|15284925|gb|BI468816.1|BI468816
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|24135389|gb|BU925899.1|BU925899
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|15662304|gb|BI699675.1|BI699675
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGTCTTTTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|9898921|gb|BE607889.1|BE607889
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|213597770|gb|DB960327.1|DB960327
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|19270057|gb|BM886313.1|BM886313
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|31561294|gb|CD487132.1|CD487132
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|17962784|gb|BM269541.1|BM269541
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|23064373|gb|BU579146.1|BU579146
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|31561507|gb|CD487345.1|CD487345
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|15286458|gb|BI470349.1|BI470349
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|8670142|gb|BE191249.1|BE191249
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|192293843|gb|FG986052.1|FG986052
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|213612114|gb|DB956851.1|DB956851
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|17401712|gb|BM178494.1|BM178494
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|209715030|gb|BW650881.1|BW650881
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|8670152|gb|BE191259.1|BE191259
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|20813004|gb|BQ297482.1|BQ297482
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|17518866|gb|BM187908.1|BM187908
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|15285366|gb|BI469257.1|BI469257
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|213595532|gb|DB962430.1|DB962430
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGAEST: gi|213595421|gb|DB962403.1|DB962403
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
EST: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATG GTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
genomic: AAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcact ... tttgtggcagGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACCGATCAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCGTTGCGCTTTTCTCCAAGAAGAAGGCAGCACCACCTCCTCCAAAGAAAAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGgtgagtcactctcccaactccaatggccatctgtttctacacattctcgttttcttttcttaacaataaatagggtgtttggattcatgttagattatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctccc