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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttgttatttattacaatcatggcagagtttggaccttggaggattatataactagctttagttgatcgttacctttttcttccctcaatttcttgaagCTTGCAGAGGTTTTCTCTAGGGATGGAATGTCTTTTTCGGTTACTTGTCAAAATCTTGTCCCTCGACCTTGGGTTATAGATGATCTTGAAACTTTCAAAA

Basic information

species Glycine max
transcript GLYMA20G35490.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208145364|gb|GD942261.1|GD942261
EST:     TAGTTAGAGGAATTTTTGCAGGGAACATATTTGATCTTGGTGCTTCACAG                         CTTGCAGAGGTTTTCTCTAGGGATGGAATGTCTTTTTCGGTTACTTGTCAA
genomic: TAGTTAGAGGAATTTTTGCAGGGAACATATTTGATCTTGGTGCTTCACAGgtaggttgat ... tttcttgaagCTTGCAGAGGTTTTCTCTAGGGATGGAATGTCTTTTTCGGTTACTTGTCAA
EST: gi|15664513|gb|BI701884.1|BI701884
EST:     TAGTTAGAGGAATTTTTGCAGGGAACATATTTGATCTTGGTGCTTCACAG                         CTTGCAGAGGTTTTCTCTAGGGATGGAATGTCTTTTTCGGTTACTTGTCAA
genomic: TAGTTAGAGGAATTTTTGCAGGGAACATATTTGATCTTGGTGCTTCACAGgtaggttgat ... tttcttgaagCTTGCAGAGGTTTTCTCTAGGGATGGAATGTCTTTTTCGGTTACTTGTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatataactagctttagttgatcgttacctttttcttccctcaatttcttgaagCTTGCAGAGGTTTTCTCTAGGGATGGAATGTCTTTTTCGGTTACTTGTCAAAATCTTGTCCCTCGACCTTGGGTTATAGATGATCTTGAAACTTTCAAAA
                      tcgttacctttttctt  CT-rich tract
 tttttctt  TA-rich tract