1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgttctttagctatatacaaatttgtttcaacagcacaccttaccccttctgcatcatttttggtacatgtctaatttctcccttttcattttcctttatttctatcttttttcctgggagtgggtcttctagATTCTATGCAGACTTCGTGAGCAAGTCCTTAGAGAACAGGGATTCAGAGATATCTTCAAGAAAATAAAG
species | Glycine max |
transcript | GLYMA20G35490.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGATTTCAAGAAAGATCCTGCAAGTCAAGGCAGGCCTCTTGATATCCTT ATTCTATGCAGACTTCGTGAGCAAGTCCTTAGAGAACAGGGATTCAGAGATEST: gi|15664513|gb|BI701884.1|BI701884
genomic: AAGATTTCAAGAAAGATCCTGCAAGTCAAGGCAGGCCTCTTGATATCCTTgtatgttctt ... ggtcttctagATTCTATGCAGACTTCGTGAGCAAGTCCTTAGAGAACAGGGATTCAGAGAT
EST: GCCTCTTGATGTCCTT CTTCCATGCAGACTTCGTGAGCAAGTCCTTAAAGAACTGGGATTCAGAGAT
genomic: GCCTCTTGATATCCTTgtatgttctt ... ggtcttctagATTCTATGCAGACTTCGTGAGCAAGTCCTTAGAGAACAGGGATTCAGAGAT
ctcccttttcattttcctttatttctatcttttttcctgggagtgggtcttctagATTCTATGCAGACTTCGTGAGCAAGTCCTTAGAGAACAGGGATTCAGAGATATCTTCAAGAAAATAAAG
tcttct CT-rich tract
tttatttctatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttctttagctatatacaaatttgtttcaacagcacaccttaccccttctgcatcatttttggtacatgtctaatttctcccttttcattttcctttatttctatcttttttcctgggagtgggtcttctagATTCTATGCAGACTTCGTGAGCAAGTCCTTAGAGAACAGGGATTCAGAGATATCTTCAAGAAAATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA