1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcaataggagggggaggggggatggtcttgtgactatcaatgaaccatgttgttttaatttgctcaagatttgtaattcctctttgattgaatgaaacagGATGTAGAGAATGCAAATGCCATATCCCTATTTGAGAATGTTGTTCGTCTTAATGATGCCATTGAAGATGAAGGGAAACGACTAGAGAATTTAGTTAGAG
species | Glycine max |
transcript | GLYMA20G35490.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCAAGTCCTTAAAGAACTGGGATTCAGAGATATCTTTAAGAAAATAAAG GATGTAGAGAATGCAAATGCCATATCCCTATTTGAGAATGTTGTTCGTCTTEST: gi|11275000|gb|BF325324.1|BF325324
genomic: AGCAAGTCCTTAGAGAACAGGGATTCAGAGATATCTTCAAGAAAATAAAGgtaagattaa ... aatgaaacagGATGTAGAGAATGCAAATGCCATATCCCTATTTGAGAATGTTGTTCGTCTT
EST: AGCAAGTCCTTAGAGAACAGGGATTCAGAGATATCTTCAAGAAAATAAAG GATGTAGAGAATGCAAATGCCATATCCCTATTTCAGAATGTTGTTCATCTTEST: gi|15664513|gb|BI701884.1|BI701884
genomic: AGCAAGTCCTTAGAGAACAGGGATTCAGAGATATCTTCAAGAAAATAAAGgtaagattaa ... aatgaaacagGATGTAGAGAATGCAAATGCCATATCCCTATTTGAGAATGTTGTTCGTCTT
EST: AGCAAGTCCTTAAAGAACTGGGATTCAGAGATATCTTTAAGAAAATAAAG GATGTAGAGAATGCAAATGCCATATCCCTATTTGAGAATGTTGTTCATCTT
genomic: AGCAAGTCCTTAGAGAACAGGGATTCAGAGATATCTTCAAGAAAATAAAGgtaagattaa ... aatgaaacagGATGTAGAGAATGCAAATGCCATATCCCTATTTGAGAATGTTGTTCGTCTT
catgttgttttaatttgctcaagatttgtaattcctctttgattgaatgaaacagGATGTAGAGAATGCAAATGCCATATCCCTATTTGAGAATGTTGTTCGTCTTAATGATGCCATTGAAGATGAAGGGAAACGACTAGAGAATTTAGTTAGAG
tgttttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaataggagggggaggggggatggtcttgtgactatcaatgaaccatgttgttttaatttgctcaagatttgtaattcctctttgattgaatgaaacagGATGTAGAGAATGCAAATGCCATATCCCTATTTGAGAATGTTGTTCGTCTTAATGATGCCATTGAAGATGAAGGGAAACGACTAGAGAATTTAGTTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - -gggaggg
- - - - - - - - - gggatgg
- - - - - - - - - - - - -tcttgtg
- - - - - - - - - - - - - - - - - - -caatgaa
- - - - - - - - - - - - - - - - - - - - - - ccatgtt