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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacattttttcttctttttttttacttgcttcttaacaaatgaaaatttgaattctgatgatttctattcttatttcttttgtcattattttatagGTAAAACATCCTGAAGTTGCGGAATTTCTTGGGTCACGTTTGTATGATTGCGTGATCAAATATGATGAACTTTAG

Basic information

species Glycine max
transcript GLYMA20G35490.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298164359|gb|HO014004.1|HO014004
EST:     AAACAAATCTCTATGCTCAATTTAAATGTGATTCCCTCAAGATAGCTATG                         GTAAAACATCCTGAAGTTGCGGAATTTCTTGGGTCACGTTTGTATGATTGC
genomic: AAACAAATCTCTATGCTCAATTTAAATGTGATTCCCTCAAGATAGCTATGgtaatacatt ... tattttatagGTAAAACATCCTGAAGTTGCGGAATTTCTTGGGTCACGTTTGTATGATTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaatttgaattctgatgatttctattcttatttcttttgtcattattttatagGTAAAACATCCTGAAGTTGCGGAATTTCTTGGGTCACGTTTGTATGATTGCGTGATCAAATATGATGAACTTTAG
           ttctgat  putative branch site (score: 3)
                                tttcttttgtcatt  putative PPT
                   atttctattcttattt  TA-rich tract