1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctgtgttatttacttagataggtttacttgaactctgaatttgctatactagatagttttacttttacctaattacttttctttttcttttcatttaaagCTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAA
species | Glycine max |
transcript | GLYMA20G35260.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACA CTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAAEST: gi|151407766|gb|EV277581.1|EV277581
genomic: GCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACAgtaagtatca ... tcatttaaagCTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAA
EST: GCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACA CTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAAEST: gi|58023586|gb|CX710327.1|CX710327
genomic: GCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACAgtaagtatca ... tcatttaaagCTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAA
EST: GCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACA CTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAA
genomic: GCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACAgtaagtatca ... tcatttaaagCTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAA
atactagatagttttacttttacctaattacttttctttttcttttcatttaaagCTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAA
acctaat putative branch site (score: 3)
ttttacttttacctaa CT-rich tract
taattacttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtgttatttacttagataggtttacttgaactctgaatttgctatactagatagttttacttttacctaattacttttctttttcttttcatttaaagCTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
ctgtgtt
- - - - - - - - - - - - - - - - ctctgaa
- - - - - - - - - - - - - - - - - - - - -tgctata