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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaaactattactgtttatgcatgcacatgtgtgctcacatatatgttgctgcaaaattttggacttgatattatgaataaagaataaaaatactccatgttttcttgcagGTAGTTATTGTCTCGGGAGTATTTTCTGCTGTGATGTTTCTCATGATTACAGCCTATGCTCGCAAAAAGGGGTTAGTAGGATCGTGAAAATCAATCTACT

Basic information

species Glycine max
transcript GLYMA20G35260.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335317|gb|CO979183.1|CO979183
EST:     TGAATATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGG                         GTAGTTATTGTCTCGGGAGTATTTTCTGCTGTGATGTTTCTCATGATTACA
genomic: TGAATATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGGgtatgcaaac ... tttcttgcagGTAGTTATTGTCTCGGGAGTATTTTCTGCTGTGATGTTTCTCATGATTACA
EST: gi|151407766|gb|EV277581.1|EV277581
EST:     TGAATATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGG                         GTAGTTATTGTCTCGGGAGTATTTTCTGCTGTGATGTTTCTCATGATTACA
genomic: TGAATATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGGgtatgcaaac ... tttcttgcagGTAGTTATTGTCTCGGGAGTATTTTCTGCTGTGATGTTTCTCATGATTACA
EST: gi|58023586|gb|CX710327.1|CX710327
EST:     TGATTATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGG                         GTAGTTATTGTCTCGGGAGTATTTTCTGCTGTGATGTTTCTCATGATTACA
genomic: TGAATATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGGgtatgcaaac ... tttcttgcagGTAGTTATTGTCTCGGGAGTATTTTCTGCTGTGATGTTTCTCATGATTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttggacttgatattatgaataaagaataaaaatactccatgttttcttgcagGTAGTTATTGTCTCGGGAGTATTTTCTGCTGTGATGTTTCTCATGATTACAGCCTATGCTCGCAAAAAGGGGTTAGTAGGATCGTGAAAATCAATCTACT
       acttgat  putative branch site (score: 5)
                                     ctccatgttttctt  putative PPT
       acttgatattatgaat  TA-rich tract